BAC Information

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BAC

Clone NameMSMg01-494E24
Chromosome1 (Build37)
Map Location 105,696,259 - 105,696,444
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494E24.T7 (MSMg01no494_e24.b1)MSMg01-494E24.TJ (MSMg01no494_e24.g1)
ACCAG571623AG571624
length765821
length of high quality
(start - end)		667 (54 - 720)199 (62 - 260)
definitionCHROMAT_FILE: MSMg01no494_e24.b1 PHD_FILE: MSMg01no494_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:08 2005CHROMAT_FILE: MSMg01no494_e24.g1 PHD_FILE: MSMg01no494_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATACGACTCACTATATTCAGAGGATCCGCGGAATTCCTAAGCCTTTAT
CACAGCTTCAATGATGTAGCTGGATATAAAATTAACTCAACCAAGTCAAT
GGCCTTTCTGTACACAAAGTATAAACAGTCTGAGAAAGAAATTAGAGAAA
CAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCGTGACT
CTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTAAA
GAATGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT
GGAATGGCAGGATCAACACTGTAAAAATGGCTATCTTGCCAAAAGCAATC
TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGA
ATTTGAAAGGGCAATCGGCAGAATCATCTGGAATAACAAAAAACCGAGGA
TAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACTATG
CCAGACCTAAAACTGTACTACAGAGCAATTGTGATCAAAACTGCATGGTT
TTGGTATAGTGACAGACAAGTAGACCAATGGAACAGAATTTAAGACCCAG
ATATGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAA
ACCATCCAGTGGAAAAAAGACAGCATTTTCAACAATTGGTGCTGGCACAA
CTGGCAGTTATCATGTAGAAGAATGCGAATTTATCCATTTCTATCTCCTT
GTACTAAAGTCAAAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCACAGGTTAAGTAATTTGAAATCCAATTGCCTTAGGTAATG
AGTGGTAATACAAGACTTAGATCAGAGGACTTTAGAAATTATAATCTGTT
TTGTATTTTCAGCTCCCTATAAATACAGAGGGCCACCAGAGTCAGAAATT
TAGATAGTGATATGGGTATGGGTATCGTGTGTGTGTTTGTGTGTGTGTGT
GTGTGTTTGNTNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNTNNNNNTT
TTTNTTTTTTTTTTTTNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTNTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTNTTT
TTTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTNNNTTTTTTTTTNTTTTTTNTTTTTTNNTTTTTTTTTTTTTTTNNTT
TTNTTTTTTTNNTCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTT
TTTTTTTTTTTTNTTTTNTTTTTTTTTTTTTTCTTCTCNCTTTCTTCTTC
TTTTCCTCTCTCTTCTCTCTCTCCTCTTTTTTTCTTTTTTTTTCTTCCCC
CCCTCCCNTCTCTCTTTCCCTTTTCCCCTTTCCCTCTTCTTTCTATTTCN
CCCCTTTCCTTTTCTTTCCCTTACCTCCTTACTTTTCCTTTTCTCCTTTT
TCCTCTAATCCTTTTNTTCCATTTCTCACAACCCATTTTTTATACTTTAA
TTTATCTCTTTTTTTATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_e24.g1 MSMg01no494_e24.g1 CHROMAT_FILE:
MSMg01no494_e24.g1 PHD_FILE: MSMg01no494_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:08 2005
         (199 letters)



>mm_chr1_105696050_105696648
          Length = 599

 Score =  306 bits (158), Expect = 8e-88
 Identities = 179/186 (96%)
 Strand = Plus / Plus

                                                                       
Query: 10  taatttgaaatccaattgccttaggtaatgagtggtaatacaagacttagatcagaggac 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 taatttgaaatccaattgccttaggtaatgagtggtaatacaagacttagatcagaggac 269

                                                                       
Query: 70  tttagaaattataatctgttttgtattttcagctccctataaatacagagggccaccaga 129
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 270 tctagaaattataatctgttttgtattttcagctccctataaatacagagagccaccaga 329

                                                                       
Query: 130 gtcagaaatttagatagtgatatgggtatgggtatcgtgtgtgtgtttgtgtgtgtgtgt 189
           |||||||| |||||||||||||||| |||||||||||||||| ||| |||||||||||| 
Sbjct: 330 gtcagaaaattagatagtgatatggatatgggtatcgtgtgtttgtgtgtgtgtgtgtgc 389

                 
Query: 190 gtgtgt 195
           ||||||
Sbjct: 390 gtgtgt 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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