Query= MSMg01no494_g20.b1 MSMg01no494_g20.b1 CHROMAT_FILE:
MSMg01no494_g20.b1 PHD_FILE: MSMg01no494_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:16 2005
(242 letters)
>mm_chr1_57223938_57224579
Length = 642
Score = 391 bits (202), Expect = e-113
Identities = 228/242 (94%), Gaps = 9/242 (3%)
Strand = Plus / Minus
Query: 1 atgcatgtgtaacatattacagctagagaacgtctctcacatccaccagtaacacaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atgcatgtgtaacatattacagctagagaacgtctctcacatccaccagtaacacaggaa 330
Query: 61 ggatggagctacctataaattccagaagtctcttatctcaaaaaagatcctgcactgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggatggagctacctataaattccagaagtctcttatctcaaaaaagatcctgcactgtta 270
Query: 121 aatgaacacagagtagaatggagtgttggactgaagtaaagatggaaagatgatgcatgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 269 aatgaacacagagtagaatggagtgttggactgaagtaaagatggaaagatgatgcatat 210
Query: 181 ggcgggggggggggggggctcttgtctggaccaaaacactctactctatctagccaaggc 240
|| |||||| |||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 209 ggtgggggg---------ctcttgtctggaccaagacactgtactctatctagccgaggc 159
Query: 241 tc 242
||
Sbjct: 158 tc 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no494_g20.g1 MSMg01no494_g20.g1 CHROMAT_FILE:
MSMg01no494_g20.g1 PHD_FILE: MSMg01no494_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:16 2005
(654 letters)
>mm_chr1_57016711_57017764
Length = 1054
Score = 1210 bits (626), Expect = 0.0
Identities = 648/656 (98%), Gaps = 3/656 (0%)
Strand = Plus / Plus
Query: 1 ccttctgaaagaatgatctctgggctgaccagggtctctgggccctccaccacaggatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ccttctgaaagaatgatctctgggctgaccagggtctctgggccctccaccacaggatat 259
Query: 61 aacacccattccatcctttatgttgcagctcacagaaagatcttttcaagtaatggcaac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 260 aacacccattccatcctttatgttgcagctcacagaaagatcttttcaagtaatggcacc 319
Query: 121 aagaaaatgttttaacaactgattttttttaaaaggtcccttctgagggtctcaactgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagaaaatgttttaacaactgattttttttaaaaggtcccttctgagggtctcaactgag 379
Query: 181 tgcaaatttgggctgtaagtgctagggacatccggtgcttgagccttagtgcttctctgc 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 380 tgcaaatttgggctgtaagtgctagggacatccggtgcttgagcctcagtgcttctctgc 439
Query: 241 gagaggctgctggggcctgactccactgtcatggccaggtgttcaggaactgtgaagttt 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagaggccgctggggcctgactccactgtcatggccaggtgttcaggaactgtgaagttt 499
Query: 301 tccagtaagaagagcaactcagcatgaaaacttagccagttgatcttggctgctgtctgc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 tccagtaagaagagcaactcagcatgaaaacttagccagt-gatcttggctgctgtctgc 558
Query: 361 tgctgtcccacagagaagtgtggactgcggaatggctgctgttagcccagcccaacaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgctgtcccacagagaagtgtggactgcggaatggctgctgttagcccagcccaacaagg 618
Query: 421 ttaacaattatggaaatgtgggacttggtgtgtgctcctttaatcccagagacaggggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttaacaattatggaaatgtgggacttggtgtgtgctcctttaatcccagagacaggggga 678
Query: 481 tgtttgaggctagccagggctacacactgagaacccacctcaaatttaaaaaaaaaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgtttgaggctagccagggctacacactgagaacccacctcaaatttaaaaaaaaaaaaa 738
Query: 541 a--gacaaatggatatatgcaatagtttacaaaactcagaatgaaagtcagatgctctgt 598
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 739 aaagacaaatggatatatgcaatagtttacagaactcagaatgaaagtcagatgctctgt 798
Query: 599 attcaagtgacagtcttaactctctacttctacctaagtgacaaggtgataacatg 654
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 799 attcaagtgacagtcttaactctctacttctaccaaagtgacaaggtgataacatg 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
