XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTCCTTCTGAGCCCAATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCT
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCATTTCCCAATCTGTTGGTGGTCTATTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTTCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGAT
TTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACA
TGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTCTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTG
TGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCT
GTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAA
GCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTTATCCTTGAG
AAAGTTTTTGCTATCCTAGGTTCTTTGTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTAAGATATTCATAGCTAATTGCAGAGTGTCTTGA
GTACTCAGCAAAAGAGAAGAAACAAAGCTCTTTCTGTGTTTCCTGAATAT
ATCTCTTAATAGGAAGGGAGACTTCATAAACAGAAAGTAAAACAATTAAG
TAATTATCTCTGCAATGATAGATGACTCAGAATGCAGAGCAGGAATTACT
AGAAACTCGTTAATATCAGTAGATACACAAAACAAGCCTATGAATAACAG
GAGGTTTCTGTCTTGTGCTCACTCAGTCCCGGATCAGATCACAAGTCTCT
ACTGAATTGAAGCCAGGCTTCAGCTGAAAGCTCTCTCTCAAAGCTCAGAG
AGCCTGCTGTCAAATACTATTTTAATACTCTTGTTTTTTTGAGTGTATTG
AAAGCTTCAAAATTATTTTATTAGCATACAAAATAGTCACTTTTATTTCA
TTGCAACTGTATATTTTCAAAGATGATTTACATTTGCTCCCATGCCCAGT
GTAGAAGAGAGTTCCCTCTTGACTGCATGCTCCCATGCTTCTTCTTATTC
CTAAATTTTCTTTTCTTTCTTTATTTTCTAAAATAATTTTTGGTAATTTT
GGTGTTGCTGTCATCAAGTACCTTACAGAATCTATTCAAAGGAAAGAATG
GCAGGGAAGCTCCATCAAAGATAGTGAGAGG

Query= MSMg01no494_l05.g1 MSMg01no494_l05.g1 CHROMAT_FILE:
MSMg01no494_l05.g1 PHD_FILE: MSMg01no494_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:36 2005
         (637 letters)



>mm_chr1_112365295_112366330
          Length = 1036

 Score = 1162 bits (601), Expect = 0.0
 Identities = 628/637 (98%), Gaps = 1/637 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagatattcatagctaattgcagagtgtcttgagtactcagcaaaagagaagaaacaa 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 836 ctaagatattcatagctaattggagagtgtcttgagtactcagcaaaagagaagaaacaa 777

                                                                       
Query: 61  agctctttctgtgtttcctgaatatatctcttaataggaagggagacttcataaacagaa 120
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 776 agctctttctgtgcttcctgaatatatctcttaataggaatggagacttcataaacagaa 717

                                                                       
Query: 121 agtaaaacaattaagtaattatctctgcaatgatagatgactcagaatgcagagcaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agtaaaacaattaagtaattatctctgcaatgatagatgactcagaatgcagagcaggaa 657

                                                                       
Query: 181 ttactagaaactcgttaatatcagtagatacacaaaacaagcctatgaataacaggaggt 240
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 656 ttactagaaactcattaatatcagtagatacacaaaacaaacctatgaataacaggaggt 597

                                                                       
Query: 241 ttctgtcttgtgctcactcagtcccggatcagatcacaagtctctactgaattgaagcca 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 596 ttctgtcttgtgctcactcagtcccggatcagatcacaagtttctactgaattgaagcca 537

                                                                       
Query: 301 ggcttcagctgaaagctctctctcaaagctcagagagcctgctgtcaaatactattttaa 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ggcttcagctgcaagctctctctcaaagctcagagagcctgctgtcaaatactattttaa 477

                                                                       
Query: 361 tactcttgtttttttgagtgtattgaaagcttcaaaattattttattagcatacaaaata 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tactcttg-ttttttgagtgtattgaaagcttcaaaattattttattagcatacaaaata 418

                                                                       
Query: 421 gtcacttttatttcattgcaactgtatattttcaaagatgatttacatttgctcccatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtcacttttatttcattgcaactgtatattttcaaagatgatttacatttgctcccatgc 358

                                                                       
Query: 481 ccagtgtagaagagagttccctcttgactgcatgctcccatgcttcttcttattcctaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 357 ccagtgtagaagagagttccctcttgactgcatgctcccatgcttctgcttattcctaaa 298

                                                                       
Query: 541 ttttcttttctttctttattttctaaaataatttttggtaattttggtgttgctgtcatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttttcttttctttctttattttctaaaataatttttggtaattttggtgttgctgtcatc 238

                                                
Query: 601 aagtaccttacagaatctattcaaaggaaagaatggc 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 aagtaccttacagaatctattcaaaggaaagaatggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space:   643302
Effective search space used:   643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)