XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTTC
TAACAAATAACTTGTTCTGAAATTATAAGAACAAGACAACAATGGATTTA
AAGCAAGGATAAAGGTTTTTCATGGATAAAATAAAATTCCAGGATTAGAA
GTACTTCCTGTTGAAATCTATCAGAACAGTAATAATAATAATAATAATAA
TAATAATAATAATAATAACTAACATAAGGCTGCCTATACTACCCATAAAA
TAGAAACTGAATAATTGCAAACTCATTGACAAAGCTTGTAATACCTTGCT
ACCAAAGCCAGAGAAACACAGTAACAGCTGTAAAGTGAAGCCAACACAAT
GATAATTTACTATGATTGAGTTGACTGCCTTCTGCTGCTTCAAGAATAAT
GCAACATTTGAAAACCCAAATAGTGACACTGCATATAAAAAAGAGAATAC
ACATCACACGATATTTTTAATAGATCATGAGAAGCCTTTTTACAATGTAG
AGCAACTTTTCTTCATAATATCCTGAGAAACTAAAGAGAAAGGAAATGTA
AATGAACATAGAAAACATAAACCATAATGGCAGTAAGGGTATTATAAATT
GGAGAAAATTAAAACAATTCTACTAAGATCTAGCATAAGATAAGATGTAT
AATTTCTCCATTCTTAATATAGACCCTGAGGTTACAGAAAGATAAGAAAT
TACAACTCAGTAAAAGGTTTACAAATAGGA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATAATTACAGTTCTTTAAGCAGTTGTGAGTCTTTGA
ATTTGTAGCTTTCTACACATAGTTGGGGGTAACATTTGTCTAAGGGTCTG
AATTTCAACATTTAGAAAGTAATTGGGTACAATATCCATTTACCAAAACA
ACAGTTGTTAGTTGTCTCCTAGGCAATATGATCGCACCAATCACATATTT
CTGAGCCGTCATATTCCCAAGCATATATTATCTCCTGTATAAGAAGACTC
AGATCTAACAGAGAACTGCTAATAACCCCAATAACAGTCGTGATACCGCA
TGAAACTATTTCCACATTGGAGCCTGGGATTTGGCGGTAACTAATCTGTT
TCTGGGGTCACTCAAATTTGACTCCAGAATAAGCTATCTCTTCCTCCTTT
GATGGTAAGAGCTGTTTTGTGTTGACAGTGTTGTTAGACTTCTAAATTAT
CCTGGTTCAACCTGATGTCTGCTGTGGATCAGGTGAGATCCAATGGAGGA
CCAGGGTTCGAGTCCTAGCTCTGCCACCCAATACCCTCTAAGTGAAGAAA
CATTTTACCTTCAAACCTTGTTTTCTTTTCTAAGGAAGCATAATAAGGGG
GCCTCAAGGGGACCGTGAGCTCACTAGAGCTTCCCTCCTTCTTCCCTCCC
TCCCCATTCTTCCTTCCTCCCTACTGTGGGG

Query= MSMg01no494_n02.b1 MSMg01no494_n02.b1 CHROMAT_FILE:
MSMg01no494_n02.b1 PHD_FILE: MSMg01no494_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:45 2005
         (642 letters)



>mm_chr1_143528463_143529504
          Length = 1042

 Score = 1154 bits (597), Expect = 0.0
 Identities = 632/649 (97%), Gaps = 11/649 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttct-aacaaataacttgttctgaaattataagaacaagacaacaatggatt 63
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 705 gaattcctttctaaacaaataacttgttctgaaattataagaacaagacaacaatgtatt 646

                                                                       
Query: 64  taaagcaaggataaaggtttttcatggataaaataaaattccaggattagaagtacttcc 123
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 645 taaagcaaggataaaggtttttcatggatgaaataaaattccaggattagaagtacttct 586

                                                                       
Query: 124 tgttgaaatctatcagaacag---------taataataataataataataataataataa 174
           |||||||||||||||||||||         ||||||||||||||||||||||||||||||
Sbjct: 585 tgttgaaatctatcagaacagtaataataataataataataataataataataataataa 526

                                                                       
Query: 175 taataataactaacataaggctgcctatactacccataaaatagaaactgaataattgca 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 taataataactaacataaggctgcctatactacccataaaatagaaactgaataattgca 466

                                                                       
Query: 235 aactcattgacaaagcttgtaataccttgctaccaaagccagagaaacacagtaacagct 294
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agctcattgacaaagcttgtaataccttgctaccaaagccagagaaacacagtaacagct 406

                                                                       
Query: 295 gtaaagtgaagccaacacaatgataatttactatgattgagttgactgccttctgctgct 354
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 405 gtaaagtgaagccaacacaatgataatttactatgattgagttgactgacttctgctgct 346

                                                                       
Query: 355 tcaagaataatgcaacatttgaaaacccaaatagtgacactgcatataaaaaagagaata 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcaagaataatgcaacatttgaaaacccaaatagtgacactgcatataaaaaagagaata 286

                                                                       
Query: 415 cacatcacacgatatttttaatagatcatgagaagcctttttacaatgtagagcaacttt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 285 cacatcacacgatatttttaatagatcatgagaagcctttttacaatgtagagaaacttt 226

                                                                       
Query: 475 tcttcataatatcctgagaaactaaagagaaaggaaatgtaaatgaacatagaaaacata 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tcttcataatatcctgagaaactaaagagaaaggaaatgtaaatgaacatagaaaacata 166

                                                                       
Query: 535 aaccataatggcagtaaggg-tattataaattggagaaaattaaaacaattctactaaga 593
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 165 aaccataatggcagtaagggttattataaattggagaaaattaaaacaattctactaaga 106

                                                            
Query: 594 tctagcataagataagatgtataatttctccattcttaatatagaccct 642
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tctagcataagataagatgtataatttctccattcttaatatagaccct 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)