BAC Information

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BAC

Clone NameMSMg01-495A06
Chromosome1 (Build37)
Map Location 8,081,389 - 8,081,753
singlet/doubletsinglet
Overlap genenone
Upstream genePcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495A06.T7 (MSMg01no495_a06.b1)MSMg01-495A06.TJ (MSMg01no495_a06.g1)
ACCAG572159AG572160
length722754
length of high quality
(start - end)
363 (332 - 694)365 (329 - 693)
definitionCHROMAT_FILE: MSMg01no495_a06.b1 PHD_FILE: MSMg01no495_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:00 2005CHROMAT_FILE: MSMg01no495_a06.g1 PHD_FILE: MSMg01no495_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGAGGACGCTCTATXXXXXXXXXXXXXXXXXXXXXXXCACTTCAAAAG
AGGATCCGCGGAATTCTCACTGCAGAAATAACGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCTTCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTT
AGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGCCTGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
CAGTTCTTCAGAAAATTGGACATATTTTTATTGGAAGATCCCACAATACC
TCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGTACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAA
TACCCAGATGCCCCTCAACAGAGGAATGGATACAAAATATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAATGAATTTATGAAATTCC
TAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAA
TCACAAAAGAACTCAAATAATATGTACTCACTGATAAGTGGATATTAGCC
CTGAAACTTAATATATTGAGATATAACGTACAATTTGCAAAACACCTGAA
ACTGAAGAAGAACGAACACCAA
CCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCGAACATCTGAGATGAAGGCCACCCAGGTC
TACAGAGAAACCCTGTCTCAAAAAAACAAAAAACAGAACAAAACAAAAAA
CAAAAAGAAAAAACAAACAAGCATATAACTGGAGAAATTAATCATTAAAC
CATACATTCATACACACATATTTATATACATTTATATATATATATGTATG
TGCATAGACATTTCAATTGTCAAAATGAAAATGCCAGAAACCATTATCAG
TGTGTCAGTGTGTGGAGAACTTTTATGTAAAATTTGGATAGAATATAAAG
ATGCAGAAGCAGAGGCTTCCCTATGTGAAATTCTACATTGGTAGAATTAC
TGTAATTATTTGACTATTTTCTTAGTTCTAGTTAAGTTTACCTTTATATT
TTTATTTGATTATTCTTCTGCTTCTTATTTAGTTTCTTTATAGTCCTAGA
TCTCAAATCCAGGGTCTTTCATATGCTAGGCAAGTGATCTAATATGGAGC
CATACTACATTATACTTGCCCTTTAATGTGCAAGTGAAGGGCAAACAAAG
AACTCCAAGTGCTTCTTTTGTCATTTTTCTGATATATGTACTTACACAAA
TGAAAAAATTTTAATTACCTACAAATTACAAGAATTTTATAAAATGTACC
AAAACATTCTTTCTTGCCTTTTTAACCTATAAATATGAAATATTAATGTA
CTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_a06.g1 MSMg01no495_a06.g1 CHROMAT_FILE:
MSMg01no495_a06.g1 PHD_FILE: MSMg01no495_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:00 2005
         (365 letters)



>mm_chr1_8081189_8081953
          Length = 765

 Score =  659 bits (341), Expect = 0.0
 Identities = 359/365 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatttggatagaatataaagatgcagaagcagaggcttccctatgtgaaattctacat 60
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 aaaatttggatagcatataaagatgcagaagcaggggcttccctatgtgaaattctacat 260

                                                                       
Query: 61  tggtagaattactgtaattatttgactattttcttagttctagttaagtttacctttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtagaattactgtaattatttgactattttcttagttctagttaagtttacctttata 320

                                                                       
Query: 121 tttttatttgattattcttctgcttcttatttagtttctttatagtcctagatctcaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tttttatttgattattcttctgcttcttatttagtttctttataggcctagatctcaaat 380

                                                                       
Query: 181 ccagggtctttcatatgctaggcaagtgatctaatatggagccatactacattatacttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ccagggtctttcatatgctaggcaagtgatctaatatggagccataccacattatacttg 440

                                                                       
Query: 241 ccctttaatgtgcaagtgaagggcaaacaaagaactccaagtgcttcttttgtcattttt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctttaatgtgccagtgaagggcaaacaaagaactccaagtgcttcttttgtcattttt 500

                                                                       
Query: 301 ctgatatatgtacttacacaaatgaaaaaattttaattacctacaaattacaagaatttt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 ctgatatatgtacttacacaaatgaaaaaattttaattacctacaaattagaagaatttt 560

                
Query: 361 ataaa 365
           |||||
Sbjct: 561 ataaa 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)