GACCGNNNNNNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTA
CAAGACCGCGGAATTCTTGAGTTTGCAATAATCTGGTTATAATAGACTTT
TCCTTCCAAATCAACTTTTCTCTGTGACTTAATAATTCTGAAATATGTAT
AGTGTAAATAATATTGCTAAAATGACAGCTCTCTTCTTGGCTGTTTAGAT
GGGAATTGAGGCTAAACAAATCTCCGTTATTTTTAAATGGGAAAACTAAA
CACTATAAACTAAATGCATTCAAAATGCAGGAATATTCAGTCCAAAACAC
TTGTGTTATTAACATGATGACTTTTTATTTTGATTTTCCCCATAACTAAA
CATAATTTAGAGTACTGGTATATTTGTTAGACTTTTATTAGTAGTAATAT
TTTAATTACATGATGTGGGTAGGGTGTATACTCACACCCAAGTGCTGGAG
GAAGCCAGAAGAGGGCCTTGAATCTCCTTGAGCTGAAACTGCAGATAGTT
GTGAGCCTTAAGGACAATGGATACTAGGAACTGAACTGAGTTTTTTACAT
AATGGTAAATGCTCTAAACCATTCTGCTATCTCCCTAGCCCCACAGTACT
GGATTGTATTTTAAGCCATTAAGAACAATTTTTCAAATAAGGTCATCCTT
GAAGTAAACATTTTACAGATGACAAATTGCCAGTTGTGTTGGTTATGAAT
TAAT

NNCCGATGATAGGGGAGGTCTGGCGGCCGCCTGGTTTTCAAATAGGGGTG
ACCTATAGAAGGTTACGAGAAATCGGGTGAGTGTTTTGATTCCAGTTTTG
ATTATAAGAAAGTCAATACCATAACAACTAAAGACAGATCAATATCTGTC
CAGAGTTTAGGGTGGAGAGAACAAAGGAAGATATCAGTCATCAAATGTAG
TTTAAATTGATTTTGATTTCATGAAAACGTAAGTGACTATAAAATAAACT
AATAAAAATTAATATATAATCAAAGACTGAAAAACATTAATATATAATCA
AAGTCAAATATTCTAGTACTGTTTTTGTAAATTACTTACAACCCTAGTAT
GAAAAGGTGACAACATTTTTGAAAGGAAATTTAAACACATTTTACAAATT
GTTTTTTAATATTTGTAGAACATGATTTTAATATTTTCATACAGAATAAT
TATTTTAAGATATATTTGTTGCTATGTCTCCATTTTCATTTCTGATTTTA
TTAATTTGAATACTATTATCTGTGCCTTCTCGTAAGTCTGGCTAAGGGTT
TATCTATCTTGTTGATTTTCTCAAAGAACCAGCTCCTGGTTTGGTTGATT
CATTTTGTTTCTACTTGGTTTATTTCAGCCCCGCTTTTGATTATTTCCTG
CCGTCTACACCTCTTGGGTGNATTTGCTTCTTTTTGTTCTAGAGCTTTCA
GGTGTGCTGTCAAGCTGCTAGTGTATGCTCAATCTAGTTTCT

Query= MSMg01no495_m03.b1 MSMg01no495_m03.b1 CHROMAT_FILE:
MSMg01no495_m03.b1 PHD_FILE: MSMg01no495_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:53 2005
         (554 letters)



>mm_chr1_44174441_44175394
          Length = 954

 Score =  986 bits (510), Expect = 0.0
 Identities = 543/554 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggttataatagacttttccttccaaatcaacttttctctgtgacttaataattctgaa 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 556 ctggttataatagacttttccttcaaaatcaacttttctctgtgacttaataattctgaa 497

                                                                       
Query: 61  atatgtatagtgtaaataatattgctaaaatgacagctctcttcttggctgtttagatgg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 496 atatgtatagtgtaaataatattgctaaaataacagctctcttcttggctgtttagatgg 437

                                                                       
Query: 121 gaattgaggctaaacaaatctccgttatttttaaatgggaaaactaaacactataaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 436 gaattgaggctaaacaaatctccgttatttttaaatgggaaaactaaacactagaaacta 377

                                                                       
Query: 181 aatgcattcaaaatgcaggaatattcagtccaaaacacttgtgttattaacatgatgact 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 376 aatgcattcaaaatgcaggaatattcagtccaaaacacttgtgttactaacatgatgacc 317

                                                                       
Query: 241 ttttattttgattttccccataactaaacataatttagagtactggtatatttgttagac 300
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agttattttgatttcccccataactaaacataatttagagtactggtatatttgttagac 257

                                                                       
Query: 301 ttttattagtagtaatattttaattacatgatgtgggtagggtgtatactcacacccaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttttattagtagtaatattttaattacatgatgtgggtagggtgtatactcacacccaag 197

                                                                       
Query: 361 tgctggaggaagccagaagagggccttgaatctccttgagctgaaactgcagatagttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgctggaggaagccagaagagggccttgaatctccttgagctgaaactgcagatagttgt 137

                                                                       
Query: 421 gagccttaaggacaatggatactaggaactgaactgagttttttacataatggtaaatgc 480
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 136 gagccttaaggacaatggatactaggaactgaactaagtcttttacataatggtaaatgc 77

                                                                       
Query: 481 tctaaaccattctgctatctccctagccccacagtactggattgtattttaagccattaa 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  tctaaaccattcagctatctccctagccccacagtactggattgtattttaagccattaa 17

                         
Query: 541 gaacaatttttcaa 554
           ||||||||||||||
Sbjct: 16  gaacaatttttcaa 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)