Query= MSMg01no496_b12.b1 MSMg01no496_b12.b1 CHROMAT_FILE:
MSMg01no496_b12.b1 PHD_FILE: MSMg01no496_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:19 2005
(550 letters)
>mm_chr1_176429056_176430005
Length = 950
Score = 928 bits (480), Expect = 0.0
Identities = 517/550 (94%), Gaps = 32/550 (5%)
Strand = Plus / Minus
Query: 1 ggctggcctctaatttatagagatctgcctgcctctgcctcccaagtgctgcattgaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggctggcctctaatttatagagatctgcctgcctctgcctcccaagtgctgcattgaagg 533
Query: 61 cttaaaagcatgtgccaccactgccaggctaagaattctgtttctttaaatgaagttata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cttaaaagcatgtgccaccactgccaggctaagaattctgtttctttaaatgaagttata 473
Query: 121 ggatagtttcatgaggtgtactgcttaggtttagtgacagaacagcagcattgagaatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggatagtttcatgaggtgtactgcttaggtttagtgacagaacagcagcattgagaatat 413
Query: 181 aaaactcaaagatcagaacagtgtggccccatgcaaacatagctttgttttgtttctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaaactcaaagatcagaacagtgtggccccatgcaaacatagctttgttttgtttctttg 353
Query: 241 ttgtttgtttcttttgacatgttttcaagtaactttgtttgaaatatctcttagaaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttgtttgtttcttttgacatgttttcaagtaactttgtttgaaatatctcttagaaaaga 293
Query: 301 gaatgttgggaatggagagacttcagcaggctggacttctgcagaatgaaatactctttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gaatgttgggaatggagagacttcagcaggctggacttctgcagaatgaaatactctttg 233
Query: 361 cacttacatgcaaaggaaggaaggaaggaaggacggaaggaagaaaagaaagaaagaaag 420
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 cacttacatgcaaaggaaggaaggaaggaaggacggaaggaaga---------------- 189
Query: 421 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 480
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ----------------aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 145
Query: 481 aaagaaagaaagaaagaaagaaagaaagtcatctctgtaagcaatctctatgtccctgtc 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 144 aaagaaagaaagaaagaaagaaagaaagtcatctctgtaggcaatctctatgtccctgtc 85
Query: 541 tccctatcat 550
||||||||||
Sbjct: 84 tccctatcat 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 32
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_b12.g1 MSMg01no496_b12.g1 CHROMAT_FILE:
MSMg01no496_b12.g1 PHD_FILE: MSMg01no496_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:19 2005
(629 letters)
>mm_chr1_176314528_176315556
Length = 1029
Score = 1208 bits (625), Expect = 0.0
Identities = 628/629 (99%)
Strand = Plus / Plus
Query: 1 ttaaaaacagaaaactggatctaccatatgaccaaattccatgactacttgccctattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaaacagaaaactggatctaccatatgaccaaattccatgactacttgccctattct 260
Query: 61 caaattatcttgcaacagagataattcagccatgctcattgctactcttcacaatagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaattatcttgcaacagagataattcagccatgctcattgctactcttcacaatagcag 320
Query: 121 gaaatggatacagcctagatatctttcaactgataaacagacgattaaaatgcatacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatggatacagcctagatatctttcaactgataaacagacgattaaaatgcatacaaa 380
Query: 181 tacttttatttacatcagccatccatactaatttagtagagtcatactgttaacttttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacttttatttacatcagccatccatactaatttagtagagtcatactgttaacttttca 440
Query: 241 tgtatctaataaatgttaatgctgaatgtcctttcaagaacttacattctgtaactgttt 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaactaataaatgttaatgctgaatgtcctttcaagaacttacattctgtaactgttt 500
Query: 301 ttaaatttctgtcataaagtttggtttaaggcagtatattcattaatgaaagtgaactaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaatttctgtcataaagtttggtttaaggcagtatattcattaatgaaagtgaactaa 560
Query: 361 ctgctcattagtattataaaaaaaaattttaggcttcctgccaaaacaaaatttagcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgctcattagtattataaaaaaaaattttaggcttcctgccaaaacaaaatttagcaag 620
Query: 421 cagcagaatttgttttatgggtttgatgaattctgtacatctcaaacccccaaggatttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagcagaatttgttttatgggtttgatgaattctgtacatctcaaacccccaaggatttg 680
Query: 481 cagaaatgtttcaaagatcacatgttacaccatgccctataactaatgagagcaaattat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaaatgtttcaaagatcacatgttacaccatgccctataactaatgagagcaaattat 740
Query: 541 aaagttgagaaaaaaagttttcttctttctttgatgaaaggcagcggggatctcccaggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagttgagaaaaaaagttttcttctttctttgatgaaaggcagcggggatctcccaggc 800
Query: 601 tcttctaaaaaaaaaactgcacaaacctc 629
|||||||||||||||||||||||||||||
Sbjct: 801 tcttctaaaaaaaaaactgcacaaacctc 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
