BAC Information

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BAC

Clone NameMSMg01-496B12
Chromosome1 (Build37)
Map Location 176,314,728 - 176,429,647
singlet/doubletdoublet
Overlap geneOlfr415, Olfr414, Olfr220, Fmn2
Upstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414
Downstream geneGrem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496B12.T7 (MSMg01no496_b12.b1)MSMg01-496B12.TJ (MSMg01no496_b12.g1)
ACCAG572982AG572983
length738741
length of high quality
(start - end)
550 (76 - 625)629 (83 - 711)
definitionCHROMAT_FILE: MSMg01no496_b12.b1 PHD_FILE: MSMg01no496_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:19 2005CHROMAT_FILE: MSMg01no496_b12.g1 PHD_FILE: MSMg01no496_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(176,429,130 - 176,429,647)(176,314,728 - 176,315,356)
sequence
NNAAAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAAGAGGA
TCCGCGGAATTCATTCTTCAGACCAGGCTGGCCTCTAATTTATAGAGATC
TGCCTGCCTCTGCCTCCCAAGTGCTGCATTGAAGGCTTAAAAGCATGTGC
CACCACTGCCAGGCTAAGAATTCTGTTTCTTTAAATGAAGTTATAGGATA
GTTTCATGAGGTGTACTGCTTAGGTTTAGTGACAGAACAGCAGCATTGAG
AATATAAAACTCAAAGATCAGAACAGTGTGGCCCCATGCAAACATAGCTT
TGTTTTGTTTCTTTGTTGTTTGTTTCTTTTGACATGTTTTCAAGTAACTT
TGTTTGAAATATCTCTTAGAAAAGAGAATGTTGGGAATGGAGAGACTTCA
GCAGGCTGGACTTCTGCAGAATGAAATACTCTTTGCACTTACATGCAAAG
GAAGGAAGGAAGGAAGGACGGAAGGAAGAAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGTCATCTCTGTAAGCAAT
CTCTATGTCCCTGTCTCCCTATCATAGAATAGCATCCCAAACCCTCTATA
AACAATCTTCTTTCTTCCTTCCTCTTCTTTTTAAAAATTTATTTATTTAT
TTATTTATTTATTTATTTATTTACTTACACAGACGGTA
TAATTTTACGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAAACAGAAAACTGG
ATCTACCATATGACCAAATTCCATGACTACTTGCCCTATTCTCAAATTAT
CTTGCAACAGAGATAATTCAGCCATGCTCATTGCTACTCTTCACAATAGC
AGGAAATGGATACAGCCTAGATATCTTTCAACTGATAAACAGACGATTAA
AATGCATACAAATACTTTTATTTACATCAGCCATCCATACTAATTTAGTA
GAGTCATACTGTTAACTTTTCATGTATCTAATAAATGTTAATGCTGAATG
TCCTTTCAAGAACTTACATTCTGTAACTGTTTTTAAATTTCTGTCATAAA
GTTTGGTTTAAGGCAGTATATTCATTAATGAAAGTGAACTAACTGCTCAT
TAGTATTATAAAAAAAAATTTTAGGCTTCCTGCCAAAACAAAATTTAGCA
AGCAGCAGAATTTGTTTTATGGGTTTGATGAATTCTGTACATCTCAAACC
CCCAAGGATTTGCAGAAATGTTTCAAAGATCACATGTTACACCATGCCCT
ATAACTAATGAGAGCAAATTATAAAGTTGAGAAAAAAAGTTTTCTTCTTT
CTTTGATGAAAGGCAGCGGGGATCTCCCAGGCTCTTCTAAAAAAAAAACT
GCACAAACCTCAAGAGGTGAAGAACCTCAACACTTAATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_b12.b1 MSMg01no496_b12.b1 CHROMAT_FILE:
MSMg01no496_b12.b1 PHD_FILE: MSMg01no496_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:19 2005
         (550 letters)



>mm_chr1_176429056_176430005
          Length = 950

 Score =  928 bits (480), Expect = 0.0
 Identities = 517/550 (94%), Gaps = 32/550 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctggcctctaatttatagagatctgcctgcctctgcctcccaagtgctgcattgaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggctggcctctaatttatagagatctgcctgcctctgcctcccaagtgctgcattgaagg 533

                                                                       
Query: 61  cttaaaagcatgtgccaccactgccaggctaagaattctgtttctttaaatgaagttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cttaaaagcatgtgccaccactgccaggctaagaattctgtttctttaaatgaagttata 473

                                                                       
Query: 121 ggatagtttcatgaggtgtactgcttaggtttagtgacagaacagcagcattgagaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggatagtttcatgaggtgtactgcttaggtttagtgacagaacagcagcattgagaatat 413

                                                                       
Query: 181 aaaactcaaagatcagaacagtgtggccccatgcaaacatagctttgttttgtttctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaaactcaaagatcagaacagtgtggccccatgcaaacatagctttgttttgtttctttg 353

                                                                       
Query: 241 ttgtttgtttcttttgacatgttttcaagtaactttgtttgaaatatctcttagaaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttgtttgtttcttttgacatgttttcaagtaactttgtttgaaatatctcttagaaaaga 293

                                                                       
Query: 301 gaatgttgggaatggagagacttcagcaggctggacttctgcagaatgaaatactctttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gaatgttgggaatggagagacttcagcaggctggacttctgcagaatgaaatactctttg 233

                                                                       
Query: 361 cacttacatgcaaaggaaggaaggaaggaaggacggaaggaagaaaagaaagaaagaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||                
Sbjct: 232 cacttacatgcaaaggaaggaaggaaggaaggacggaaggaaga---------------- 189

                                                                       
Query: 421 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 480
                           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ----------------aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 145

                                                                       
Query: 481 aaagaaagaaagaaagaaagaaagaaagtcatctctgtaagcaatctctatgtccctgtc 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 144 aaagaaagaaagaaagaaagaaagaaagtcatctctgtaggcaatctctatgtccctgtc 85

                     
Query: 541 tccctatcat 550
           ||||||||||
Sbjct: 84  tccctatcat 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 32
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no496_b12.g1 MSMg01no496_b12.g1 CHROMAT_FILE:
MSMg01no496_b12.g1 PHD_FILE: MSMg01no496_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:19 2005
         (629 letters)



>mm_chr1_176314528_176315556
          Length = 1029

 Score = 1208 bits (625), Expect = 0.0
 Identities = 628/629 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaaacagaaaactggatctaccatatgaccaaattccatgactacttgccctattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaaacagaaaactggatctaccatatgaccaaattccatgactacttgccctattct 260

                                                                       
Query: 61  caaattatcttgcaacagagataattcagccatgctcattgctactcttcacaatagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaattatcttgcaacagagataattcagccatgctcattgctactcttcacaatagcag 320

                                                                       
Query: 121 gaaatggatacagcctagatatctttcaactgataaacagacgattaaaatgcatacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatggatacagcctagatatctttcaactgataaacagacgattaaaatgcatacaaa 380

                                                                       
Query: 181 tacttttatttacatcagccatccatactaatttagtagagtcatactgttaacttttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacttttatttacatcagccatccatactaatttagtagagtcatactgttaacttttca 440

                                                                       
Query: 241 tgtatctaataaatgttaatgctgaatgtcctttcaagaacttacattctgtaactgttt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaactaataaatgttaatgctgaatgtcctttcaagaacttacattctgtaactgttt 500

                                                                       
Query: 301 ttaaatttctgtcataaagtttggtttaaggcagtatattcattaatgaaagtgaactaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaatttctgtcataaagtttggtttaaggcagtatattcattaatgaaagtgaactaa 560

                                                                       
Query: 361 ctgctcattagtattataaaaaaaaattttaggcttcctgccaaaacaaaatttagcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgctcattagtattataaaaaaaaattttaggcttcctgccaaaacaaaatttagcaag 620

                                                                       
Query: 421 cagcagaatttgttttatgggtttgatgaattctgtacatctcaaacccccaaggatttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagcagaatttgttttatgggtttgatgaattctgtacatctcaaacccccaaggatttg 680

                                                                       
Query: 481 cagaaatgtttcaaagatcacatgttacaccatgccctataactaatgagagcaaattat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaaatgtttcaaagatcacatgttacaccatgccctataactaatgagagcaaattat 740

                                                                       
Query: 541 aaagttgagaaaaaaagttttcttctttctttgatgaaaggcagcggggatctcccaggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagttgagaaaaaaagttttcttctttctttgatgaaaggcagcggggatctcccaggc 800

                                        
Query: 601 tcttctaaaaaaaaaactgcacaaacctc 629
           |||||||||||||||||||||||||||||
Sbjct: 801 tcttctaaaaaaaaaactgcacaaacctc 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)