NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTAATATCGAACACTTGAGAAAAAAGGATTAATGCATGCCTC
TTTTTATAAAAATACATACAGATATTATATATGGACATATAATGCAGTAG
TAAAAATGTTGATTTTTTTTAGTCAATTATGTGTTACACATATTTTTATA
TAATAAAAAAGAGTTAATGAAAAAAAAAAAAGAAATAAAGCTAAGAGCCC
TATTTGGTGATATATACTTGGTGTCCTGGTTTATACCCAATGGTAATGCA
TAAACAAGTGGTAGGTGGCATTGATAATGATATATTTTATGGTCAAGTGA
AGAAGACCAAATTTGCAAGTTTCTAGATGTGGTTCTGAATTGGACATCAT
GTAGTTTTGGAACATAATTATATGTAGTGTGCCCAACTAACTTATGAGCT
GGAGGGAAAACTGTCTAGCAGTTCTTCCAGGCATTCAAGTTCAGACACCA
ATCTGTACAAAGTTGATGGAGTGGATGATGTGGCTGTGCTGCACACACAA
GTAACCTAAAAGTAAATAATGACATGTATAAATGTATAAGGAAAAGGCTA
ATTATATTGTCTGACCTGTAATGGAAATTTCTTTTTTATTTAAACATTTT
AATGAATTTTATATGTAAGAGCTCTATTTTACCCTTCTCTCTATTTTGTC
CATTTCTTTTGCTGTCCATCCTAATTACCTACTATATTTGTGGCATATCA
TGTATACACAN

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTTT
AATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATA
TATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTTTCC
CAATCTGTTGGTGGCCTTTTTGTCTTATTGACTGTGTCTTTTGCTTTGCA
GAACCTTTGCAATTTTATGAGGTCCCATTTATCGATTCTTGATCTTACAG
CACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCT
TTGAGGCTTTTCCTTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTT
TATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATA
GTGGATGATCACAGTCAGCTATTGGATGGGTCACACGGCCCCCAATGGAG
GAGCTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGT
AGAACAACAATATGAACTAACCAGTACCCCGGAGCTCTTGTCTCTAGCTG
CATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCC
ATTGGACTTGCAAACTTTATATGCCCCAGTACAGGCGAAGGCCAGGGCCA
AAAAGGTGAAGTGGGTGGGTAGGAAAAGGGGGGGGGGGGGTTGGGGGGNG
GNNNNNN

Query= MSMg01no496_k17.b1 MSMg01no496_k17.b1 CHROMAT_FILE:
MSMg01no496_k17.b1 PHD_FILE: MSMg01no496_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:05 2005
         (641 letters)



>mm_chr1_110765027_110766070
          Length = 1044

 Score = 1060 bits (548), Expect = 0.0
 Identities = 611/642 (95%), Gaps = 23/642 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaatatcgaacacttgagaaaaaaggattaatgcatgcctctttttataaaa 64
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaaaaaagaacacttgagaaaaaaggattaatgcatgcctctttttataaaa 264

                                                                       
Query: 65  atacatacagatattatatatggacatataatgcagtagtaaaaatgttgatttttttt- 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 atacatacagataatatatatggacatataatgcagtagtaaaaatgttgattttttttt 324

                                                                       
Query: 124 --agtcaattatgtgttacacatatttttatataataaaaaagagttaatgaaaaaaaaa 181
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 ttagtcaattatgtgttacacatatttttatataataaaaaagagttaatgaaaaaaaa- 383

                                                                       
Query: 182 aaagaaataaagctaagagccctatttggtga-tatatacttggtgtcctggtttatacc 240
              |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 384 ---gaaataaagctaagagccctatttgg-gaatatatacttggtgtcctggtttatacc 439

                                                                       
Query: 241 caatggtaatgcataaacaagtggtaggtggcattgataatgatatattttatggtcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 caatggtaatgcataaacaagtggtaggtggcattgataatgatatattttttggtcaag 499

                                                                       
Query: 301 tgaagaagaccaaatttgcaagtttctagatgtggttctgaattggacatca-tgtagtt 359
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct: 500 tgaagaagaccaaatttgcaagtttctagatgtggttctgaattggacttcact-tagtt 558

                                                                       
Query: 360 ttggaacataattatatgtagtgtgcccaactaacttatgagctggagggaaaactgtct 419
           ||||||||||||||| ||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 559 ttggaacataattatgtgtagtgtgcccaact----tatgagctggagggaaaactgtct 614

                                                                       
Query: 420 agcagttcttccaggcattcaagttcagacaccaatctgtacaaagttgatggagtggat 479
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agcaattcttccaggcattcaagttcagacaccaatctgtacaaagttgatggagtggat 674

                                                                       
Query: 480 gatgtggctgtgctgcacacacaagtaacctaaaagtaaataatgacatgtataaatgta 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 675 gatgtggctgtgctgcacacacaagtaacctaaaagtaaataatgacatgtataa----- 729

                                                                       
Query: 540 taaggaaaaggctaattatattgtctgacctgtaatggaaatttcttttttatttaaaca 599
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ---ggaaaaggctaattatattgtctgacctgtaatggaaatttcttttttatttaaaca 786

                                                     
Query: 600 ttttaatgaattttatatgtaagagctctattttacccttct 641
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ttttaatgaattttatatgtaagagctctattttacccttct 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1044
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1034
Effective search space:   652454
Effective search space used:   652454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)