NNNNCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTCATGTTTGTGAAGGTTTGAGGACCGTCTAAACGCTTTG
CCACACTGAGCACATGTATACCGTTTCTCTCGAGTATGGCTTCTTTCATG
CTGAAGAAGTTGATAAGAATGAATGCATGCTTTCCCACAATACTTACATA
TGAAACTCCATTCTCTTTTGTGAGTTTTTTCATGATTATGACAGGCCATG
GAATACAGGAAAGTTTCACCACAGTGTCTACATGAGTATGTTTTTTCTCT
TGTGTGATCTCTTTTGTGAGTTTTTTCATGATTACGACGGGCCATGGAAT
ACAGGAAAGTTTCACCACAGTGTCTACATGAGTATGTTTTTTCTCTTGTG
TGAATTCTCTGATGTTTGGTCCGGTGACTGGAATTAACAAAGGCTTCTCC
ACATTGCTTACACTCAAGTGGTTTTTCTCCAGTATGGATCCTTTCATATA
TTTGAATATCACTTTCTCCCTTTAAGGTTTTCTCAAATTGTTTACACTCA
TGTAGCTCATCTCCAGTGTGGGCTCTCTTAGAATCTTGATGAGGCGTAAG
AGTCCTGTAAGATTCATAGGTCTGTGTATTTTCACAACTGTTCTCTGTGG
CAGGAAGACTCTCAAGTGTATGGAAGGATTCAGAATAGGTGACGTCTTTC
CAACATTTTTCACGTTTGATAGCTTTTTCCACGAGTTCCTGACATCTGT

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGATTCATATTAACTGTC
TAAACTCAGCCCATGGGCCAGGAGAAGTTCCAAGCTGTGTCCTGTAAGCA
CGGATTCACATAAGCTTCTGCAAATTAGCCGGTTCCGCGGGAACGCGGGA
ACTTGGTGAAGCCAAGTGAGAGGCACAAAAGAAAATATCAAAAGACAGGA
GTTCCAGCCCAAACAGCGAAAATAAACACTCCTGGGCAGCCTCGTGGGCT
CCTGGGCTCTCCTTTGCTGGAGGCAGAAAACTGGCACAGGCCTTGAGAAG
CTGCTGCGCACGAGCAAATAGGGGCCACAGATCACCAACCACTGTTCATT
TCTGTCAAGTGTTCCCAGGGAACATTTGTTAGATCTGAAGGCTGTCAGTT
CGCCCTGGGCACTTCATGTCACAAAGGGTAAGACAGCCTCTCACAAAAGA
GTTTCTCTCCTAGGCCTCGGGGTTTTGCCTGAAAGCAAATGAAAAGCTTG
ATTTTCAAACCTAAGTGCTGAGCCAAACCAATAGACATGACTGCGGCAGT
GCATGCCTTATAACCTTTCTCCTTCTCCTTCCCTGCCCCTGCCTCCCTGC
TTCCTTCAATCCAAGAATTTCTCTTTTTCTCATTTTTTTTTTCATTCCTA
AATGCTTTACTCCTTCAGATAATACTGCTCGGAATTTGACCCGGAGGTCT
GGCTTCCGACAGCAGN

Query= MSMg01no496_l19.g1 MSMg01no496_l19.g1 CHROMAT_FILE:
MSMg01no496_l19.g1 PHD_FILE: MSMg01no496_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:11 2005
         (618 letters)



>mm_chr1_106880408_106881426
          Length = 1019

 Score = 1127 bits (583), Expect = 0.0
 Identities = 610/619 (98%), Gaps = 1/619 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagattcatattaactgtctaaactcagcccatgggccaggagaagttccaagctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accagattcatattaactgtctaaactcagcccatgggccaggagaagttccaagctgtg 260

                                                                       
Query: 61  tcctgtaagcacggattcacataagcttctgcaaattagccggttccgcgggaacgcggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgtaagcacggattcacataagcttctgcaaattagccggttccgcgggaacgcggg 320

                                                                       
Query: 121 aacttggtgaagccaagtgagaggcacaaaagaaaatatcaaaagacaggagttccagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttggtgaagccaagtgagaggcacaaaagaaaatatcaaaagacaggagttccagcc 380

                                                                       
Query: 181 caaacagcgaaaataaacactcctgggcagcctcgtgggctcctgggctctcctttgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacagcgaaaataaacactcctgggcagcctcgtgggctcctgggctctcctttgctg 440

                                                                       
Query: 241 gaggcagaaaactggcacaggccttgagaagctgctgcgcacgagcaaataggggccaca 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 441 gaggcagaaaactggcacaggccttgagaagctgctgcgcaggagcaaacaggggccaca 500

                                                                       
Query: 301 gatcaccaaccactgttcatttctgtcaagtgttcccagggaacatttgttagatctgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatcaccaaccactgttcatttctgtcaagtgttcccagggaacatttgttagatctgaa 560

                                                                       
Query: 361 ggctgtcagttcgccctgggcacttcatgtcacaaagggtaagacagcctctcacaaaag 420
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctgtcagtttgccctgggcactttatgtcacaaagggtaagacagcctctcacaaaag 620

                                                                       
Query: 421 agtttctctcctaggcctcggggttttgcctgaaagcaaatgaaaagcttgattttcaaa 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcttctctcctaggcctcggggttttgcctgaaagcaaatgaaaagcttgattttcaaa 680

                                                                       
Query: 481 cctaagtgctgagccaaaccaatagacatgactgcggcagtgcatgccttataacctttc 540
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||
Sbjct: 681 cctaagtgctgagccaaaccaatagacatggctgcggcagtgcacgccttataacttttc 740

                                                                       
Query: 541 tccttctccttccctgcccctgcctccctgcttccttcaatccaagaatttctctttttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccttctccttccctgcccctgcctccctgcttccttcaatccaagaatttctctttttc 800

                              
Query: 601 tcatttttttttt-cattc 618
           ||||||||||||| |||||
Sbjct: 801 tcatttttttttttcattc 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space:   613472
Effective search space used:   613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)