Query= MSMg01no496_n19.b1 MSMg01no496_n19.b1 CHROMAT_FILE:
MSMg01no496_n19.b1 PHD_FILE: MSMg01no496_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:20 2005
(624 letters)
>mm_chr1_120238043_120239064
Length = 1022
Score = 687 bits (355), Expect = 0.0
Identities = 423/453 (93%), Gaps = 18/453 (3%)
Strand = Plus / Plus
Query: 173 aaaaagaaaaagaaagaagttgtataaacggctgctggaccatggtggcatatatattta 232
||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 aaaaagaaaaa-aaa-aagttgtataaacggttgctggaccatggtggcatatatattta 435
Query: 233 atcccagcacttgggaggcacaggcaggtggatctcttgagttcaagtccagcctggtct 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atcccagcacttgggaggcacaggcaggtggatctcttgagttcaagtccagcctggtct 495
Query: 293 gcaaaaagagtttcaacatgaccagaggctatagcgaaaccctctcttggggggaaaaa- 351
||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||
Sbjct: 496 gcaaaaagagtttcagcatga---ggggctatagcgaaaccctctcttgggggaaaaaag 552
Query: 352 agttatataaactgataacatgaccactctatagtatggctcaggggaaagtttcattgg 411
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 553 agttgtataaactgataacatgaccactctatagtatggctcaggggaaagtttctttgg 612
Query: 412 aggtatgtaagagggagagaacggctagaggcatctggcatggagaaaaaagagcagaga 471
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 613 aggtatgtaacagggagagaacggctagaggcatctggcatggagaaaaaagagcggaga 672
Query: 472 aagaagtagactgaacatggccagtagactggagctgcctggccaggactgtctgtgaga 531
||| ||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct: 673 aag---tagactgaacatggccagtggactggagctgactggccaggactgactgtgaga 729
Query: 532 ggggaaaatagaaggggagagaaaacagagagagagagagagagaagcagcagggcatag 591
||||||||||| |||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 730 ggggaaaatagcaggggaga--aaacagagagagagagaga-------agcagggcatag 780
Query: 592 agagaggacttggctggaacagcaggatgataa 624
|||||||||||||||||||||||||||||||||
Sbjct: 781 agagaggacttggctggaacagcaggatgataa 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1022
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1012
Effective search space: 621368
Effective search space used: 621368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_n19.g1 MSMg01no496_n19.g1 CHROMAT_FILE:
MSMg01no496_n19.g1 PHD_FILE: MSMg01no496_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:20 2005
(544 letters)
>mm_chr1_120312903_120313844
Length = 942
Score = 1000 bits (517), Expect = 0.0
Identities = 537/545 (98%), Gaps = 4/545 (0%)
Strand = Plus / Minus
Query: 1 actcgcactgagttcaaagcagcacgggcctgccaatcagcatctcttcccacagttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 actcgcactgagttcaaagcagcacgggcctgccaatcagcatctcttcccacagttcct 591
Query: 61 gcagcaatcgcagcacagcatgcattgcagcaggagcctcaggttttgttctacgtgccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gcagcaatcgcagcacagcatgcattgcagcaggagcctcaggttttgttctacgtgccc 531
Query: 121 cactcttctctctttcttgccaggctgtgtgcctgcctgggatgccgaaaggccaccaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cactcttctctctttcttgccaggctgtgtgcctgcctgggatgccgaaaggccaccaac 471
Query: 181 acgcagctcagtgaagacagaaccattccaagataggggttccagcccgtgttcctcggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 acgcagctcagtgaagacagaaccattccaagataggggttccagcccgtgttcctcggg 411
Query: 241 gcaagaaatagtgctatctgggatgaactctgtgcttctcaatctcctgtgtacccagat 300
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 410 gcaagaaatagcgctatctgggatgaactctgtggttctcaatctcctgtgtacccagat 351
Query: 301 gctgcaggggacctcgaggagttaggaacatcttggggggggggggggtgtccataggaa 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 350 gctgcaggggacctcgaggagttaggaacatctt---gggggggggggtgtccataggaa 294
Query: 361 gggcgtggctgagtccgggacagggaatccagtttggtccgagggagtgctgaaagtaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gggcgtggctgagtccgggacagggaatccagtttggtccgagggagtgctgaaagtaat 234
Query: 421 ggaggggctggaaggga-cccccgtcacccccgccccatggcactccttgatgaagaaga 479
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 233 ggaggggctggaagggaccccccatcacccccgccccatggcactccttgatgaagaaga 174
Query: 480 cagtccttgcttatccaaactgctttactcatgggggatgggaatgcataggtctcactc 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 173 cagtccttgcttatccaaactgctttactcgtgggggatgggaatgcataggtctcactc 114
Query: 540 ggggt 544
|||||
Sbjct: 113 ggggt 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 942
Length adjustment: 10
Effective length of query: 534
Effective length of database: 932
Effective search space: 497688
Effective search space used: 497688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
