BAC Information

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BAC

Clone NameMSMg01-496P24
Chromosome1 (Build37)
Map Location 53,944,956 - 53,945,130
singlet/doubletsinglet
Overlap geneHecw2
Upstream geneHibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496P24.T7 (MSMg01no496_p24.b1)MSMg01-496P24.TJ (MSMg01no496_p24.g1)
ACCAG573672AG573673
length711769
length of high quality
(start - end)
179 (50 - 228)536 (73 - 608)
definitionCHROMAT_FILE: MSMg01no496_p24.b1 PHD_FILE: MSMg01no496_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:31 2005CHROMAT_FILE: MSMg01no496_p24.g1 PHD_FILE: MSMg01no496_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCTGCCTCTGCAGAGGTGCTGAGCTGCAGTAAACTCCCTGT
GGGACTGTGCATTAGGGCATTATCTCCTCAGAAGCAATTTTACATGCCCA
TTAGAGGGCCTGGTGCAACAGCTCTTTCTGGTTTGAGCCTCCCACACCAG
ACAGCTAACAGTAGCAGNTTGTGTAAGACCCTAAAAAAAGGGGTCCAAAC
CCCCTTAAAAGNCCCCTGGTGTGAAAAATTTTTTTAAAACCCCCCTCTTT
TTTAAAAAAATTTTGGGGGTGGGTGGGAAAAAAANCNCCCCCCCCCCTCT
AAATATAATTTTTTTTTTTAAATATATATGATAAGAGGGAGAAAAANATT
TTTTTTTTTTTTTTCGAGGAGAGAGGGAAAAAAAATAAAAATTAAAATTT
GTTCGTCCCCTCCCGCCCCCCCCNCCCCCGTCGCCCGTCTCTTTTTTATT
AAAGACAATANACATATAAATGCAAAAGACTAAAAGCAAATGAAAATATA
TTTATTCTATTATTTTTATATTTTGCCCTTTTCAGTTTTCTCGGCGTCTG
TACTCCCATGTTTATGGCCTGGTTCTTTTCTATTTTTCCCTTTTATTATT
TCCCATTTCCCCTTATATTTCTCTGATTTTATAGCAATCATATTCCACTA
TTTTCCCTTTG
NACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXATCACAAATTGGGGTG
AACTATAGAAGTTCCCGCGAAATTCTGTTCAGATCCACAGCCCATTTTTT
TTTTTTTTGACCAGGTCAAATTGTTTTCTAGATTCTTTGTCTATTCTGGG
TACTAATGCTCTATAGGATGTGTAGCTGGCAATGATTATTTATTCTTTAT
TTCTGCAGTGATGTAGCCATTTTTAATATTAAATCTACCAATCCATGAAC
GTGGGAGATCATTCTTTCTTCCAATGTCTCCCTCAACCTCTTTCTTCAGA
GACTTAATTGTCTCCTTTCTTGTTGGCTAGGTTTATTCCTAGACACATAT
TTCGGAGGCTGTTGTGAATGGAAGTGTTTTCTTTGATCTCATTCTTAGTG
TATTATTAGTGTATACAAAGCCTATTTTTTTTAAGTTAAATCTGTATCCT
GTTACTTTGATGAAGATGTTGATCATTTCTAGATGCTTTCTGATGGAATT
TTGGGCATCTCATAAGTATAATCATATCATCTGCAAATAGGGAGAATTTG
ACCTCTTTCCTTATTTGAATCCCTTTAAATTCCTTTTCTCTTGTTTGCTA
TACTGCTAGATCTTNCAGCACCATATTGAATAACCCTGCCTCATTCCAGA
TTGTTTATATGTTTTTTTCAAGTTTTTCTCCTTTTAAGATGATGTTGGAG
AGGGTTGTCAATATAACCTGTATTGTGTTGAGTATGCCCCCCCCCAGCCT
TCTTCTCTAGGAATTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_p24.b1 MSMg01no496_p24.b1 CHROMAT_FILE:
MSMg01no496_p24.b1 PHD_FILE: MSMg01no496_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:31 2005
         (179 letters)



>mm_chr1_53944753_53945330
          Length = 578

 Score =  317 bits (164), Expect = 2e-91
 Identities = 173/176 (98%), Gaps = 1/176 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctgcctctgcagaggtgctgagctgcagtaaactccctgtgggactgtgcat 63
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 ggaattccctgcctcagcagaggtgctgagctgcagtaaacttcctgtgggactgtgcat 263

                                                                       
Query: 64  tagggcattatctcctcagaagcaattttacatgcccattagagggcctggtgcaacagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagggcattatctcctcagaagcaattttacatgcccattagagggcctggtgcaacagc 323

                                                                   
Query: 124 tctttctggtttgagcctcccacaccagacagctaacagtagcagnttgtgtaaga 179
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 tctttctggtttgagcctcccacaccagacagctaacagtagcag-ttgtgtaaga 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 578
Length adjustment: 8
Effective length of query: 171
Effective length of database: 570
Effective search space:    97470
Effective search space used:    97470
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)