BAC Information

Click to search

BAC

Clone NameMSMg01-497D21
Chromosome1 (Build37)
Map Location 192,502,110 - 192,565,044
singlet/doubletdoublet
Overlap genenone
Upstream geneCenpf, Ptpn14, LOC100042438, Smyd2, Prox1, LOC100039394
Downstream geneEG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497D21.T7 (MSMg01no497_d21.b1)MSMg01-497D21.TJ (MSMg01no497_d21.g1)
ACCAG573858AG573859
length758766
length of high quality
(start - end)		636 (50 - 685)589 (81 - 669)
definitionCHROMAT_FILE: MSMg01no497_d21.b1 PHD_FILE: MSMg01no497_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:51 2005CHROMAT_FILE: MSMg01no497_d21.g1 PHD_FILE: MSMg01no497_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(192,502,110 - 192,502,669)(192,564,464 - 192,565,044)
sequence
NAATAATCTTTCCTCGTGTCACTAAXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCAAAAATGTCTTATTTCCACGTCTATTGTCAAGCCTAAT
TATTGGTTGAAATTAGAGGTTCTGCCCTGATCATGGCCATGAATAAATAA
AGATATGTTTGAATTTCCACAGATGTTATTGAGTTTCATGTATCTTTCCT
TTCTGGGAATGAAAAGGAAGCTGAAGCCAGCTCCACATACACTGACGTCT
ACGTTTAAGGTATAGAGACCTTGGCCTCCTGAGGAGGCGCCTGACTGCCC
ACACACAAGTCAGCCTTCTGACCACCTTTGGATGTCTCCATCCATCAGAC
CGCACAGCTGACTAAATGAAACCAAGACAGTCTGCATTCCTGAGTTTTCC
TCCGGGCTGTGGAAGATTCACTCGGGCATTGAATCCAAGCCCAGCAAGAT
AACGGCAGTGTGTGGACTATTTCCCCCCATGCGCTCACTCCACATGTGCC
ATCCTCACATAGTTGATCATTTAATCAGATGGTCCGGGAGCCAGCTCAGG
CCCAAGAATGCAGGTGACAAGCAGAAGAACACAAAGAGAGAGACAGCTTC
TGCCTTGAGCAACCCAAGGGCTCACACCCATCGACTCTTGGGACACTCTC
CAGGTGCCCCTGGTGTCACACGACTGCATTCCACCAACCCAGGACAGAAA
ACAAGAGGGAAATGTGCCTTGTATTGAGGAGTACAGATTTCTTCTGATCC
TCATCCCN

TTTTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCCTTCCCCCACAGAAAC
CATCCACCATTCTGCTCAGTGGAGATTTCCTACTCCAAAGTTTCAGAGAG
ATCTCTCCTATTCGTAGCCTTTTTCTGGGACCAGGAAGAGCATGTAAATG
GCCCAACTTCAAATTATTCATTGTTTAGCTATCCTCATTCAGATGTTGTT
TTCCTGATGGGCAAACAGCTCCAGAACTCAACACTCATGGAAGTGGAAAA
TAGATATATATTGAAGCGGATTTAGGTCATTGTTGAGAGATCCATGGGCT
GTACTGGTGCCTTCAAGGCCTTTGAACTTCACGAGGAGAAACTATTCAGA
GGTATGTGGATCTCCTCTAGTCAGCCGAGCTCGTGACTAACGAGTCTAGA
ATGGTAGTTCTTGGTAGTTGGGATGAGAAATGTCCTCTATGGTCTTGGGC
TTTTGATACTTTGTTACTTTGTCCCCACTTGGTGGTGCTGTTTGGGAAGG
TGTAGGAGGTGTGGCCTCCATGGAGGATTAGTCACTAGGGGTGGGTAAAA
GCTCTCCTTCAGTGCTCAGGTTCAAGAGGTGAGCCCTCAGCACCCTGCTC
TGGNCACCATGCCTGCTGCTTGCTACCATGCCTCTCAGCTGTGATGGACT
TAACCCTCTGAAACATAACCCTGAATGTGAGGACCGGGTGTTGGCGCAGT
CCCAAAGGTGCAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_d21.b1 MSMg01no497_d21.b1 CHROMAT_FILE:
MSMg01no497_d21.b1 PHD_FILE: MSMg01no497_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:51 2005
         (636 letters)



>mm_chr1_192501906_192502941
          Length = 1036

 Score = 1067 bits (552), Expect = 0.0
 Identities = 558/560 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcaaaaatgtcttatttccacgtctattgtcaagcctaattattggttgaaat 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcaaaaatgttttatttccacgtctattgtcaagcctaattattggttgaaat 264

                                                                       
Query: 65  tagaggttctgccctgatcatggccatgaataaataaagatatgtttgaatttccacaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagaggttctgccctgatcatggccatgaataaataaagatatgtttgaatttccacaga 324

                                                                       
Query: 125 tgttattgagtttcatgtatctttcctttctgggaatgaaaaggaagctgaagccagctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttattgagtttcatgtatctttcctttctgggaatgaaaaggaagctgaagccagctc 384

                                                                       
Query: 185 cacatacactgacgtctacgtttaaggtatagagaccttggcctcctgaggaggcgcctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacatacactgacgtctacgtttaaggtatagagaccttggcctcctgaggaggcgcctg 444

                                                                       
Query: 245 actgcccacacacaagtcagccttctgaccacctttggatgtctccatccatcagaccgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actgcccacacacaagtcagccttctgaccacctttggatgtctccatccatcagaccgc 504

                                                                       
Query: 305 acagctgactaaatgaaaccaagacagtctgcattcctgagttttcctccgggctgtgga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagctgactaaatgaaaccaagacagtctgcattcctgagttttcctccgggctgtgga 564

                                                                       
Query: 365 agattcactcgggcattgaatccaagcccagcaagataacggcagtgtgtggactatttc 424
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 agattcactcgggcattgaatccaaacccagcaagataacggcagtgtgtggactatttc 624

                                                                       
Query: 425 cccccatgcgctcactccacatgtgccatcctcacatagttgatcatttaatcagatggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cccccatgcgctcactccacatgtgccatcctcacatagttgatcatttaatcagatggt 684

                                                                       
Query: 485 ccgggagccagctcaggcccaagaatgcaggtgacaagcagaagaacacaaagagagaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccgggagccagctcaggcccaagaatgcaggtgacaagcagaagaacacaaagagagaga 744

                               
Query: 545 cagcttctgccttgagcaac 564
           ||||||||||||||||||||
Sbjct: 745 cagcttctgccttgagcaac 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_d21.g1 MSMg01no497_d21.g1 CHROMAT_FILE:
MSMg01no497_d21.g1 PHD_FILE: MSMg01no497_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:51 2005
         (589 letters)



>mm_chr1_192564464_192565452
          Length = 989

 Score = 1110 bits (574), Expect = 0.0
 Identities = 579/581 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccccttcccccacagaaaccatccaccattctgctcagtggagatttcctactccaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cccccttcccccacagaaaccatccaccattctgctcagtggagatttcctactccaaag 522

                                                                       
Query: 61  tttcagagagatctctcctattcgtagcctttttctgggaccaggaagagcatgtaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tttcagagagatctctcctattcgtagcctttttctgggaccaggaagagcatgtaaatg 462

                                                                       
Query: 121 gcccaacttcaaattattcattgtttagctatcctcattcagatgttgttttcctgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcccaacttcaaattattcattgtttagctatcctcattcagatgttgttttcctgatgg 402

                                                                       
Query: 181 gcaaacagctccagaactcaacactcatggaagtggaaaatagatatatattgaagcgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gcaaacagctccagaactcaacactcatggaagtggaaaatagatatatattgaagcgga 342

                                                                       
Query: 241 tttaggtcattgttgagagatccatgggctgtactggtgccttcaaggcctttgaacttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 341 tttaggtcattgttgagagatccatgggctgtactggtgccttcaaggcctttgaacttt 282

                                                                       
Query: 301 acgaggagaaactattcagaggtatgtggatctcctctagtcagccgagctcgtgactaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 acgaggagaaactattcagaggtatgtggatctcctctagtcagccgagctcgtgactaa 222

                                                                       
Query: 361 cgagtctagaatggtagttcttggtagttgggatgagaaatgtcctctatggtcttgggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cgagtctagaatggtagttcttggtagttgggatgagaaatgtcctctatggtcttgggc 162

                                                                       
Query: 421 ttttgatactttgttactttgtccccacttggtggtgctgtttgggaaggtgtaggaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttttgatactttgttactttgtccccacttggtggtgctgtttgggaaggtgtaggaggt 102

                                                                       
Query: 481 gtggcctccatggaggattagtcactaggggtgggtaaaagctctccttcagtgctcagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gtggcctccatggaggattagtcactaggggtgggtaaaagctctccttcagtgctcagg 42

                                                    
Query: 541 ttcaagaggtgagccctcagcaccctgctctggncaccatg 581
           ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 41  ttcaagaggtgagccctcagcaccctgctctggccaccatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |