Query= MSMg01no497_f10.b1 MSMg01no497_f10.b1 CHROMAT_FILE:
MSMg01no497_f10.b1 PHD_FILE: MSMg01no497_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:59 2005
(687 letters)
>mm_chr1_83083088_83084173
Length = 1086
Score = 1135 bits (587), Expect = 0.0
Identities = 659/687 (95%), Gaps = 9/687 (1%)
Strand = Plus / Plus
Query: 5 gaattcttcagatcctctttagatcttttgagttttatcttccttaaggacactccaatg 64
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattctttagatcttctttagatcttttgagttttattttccttaaggacactccaatg 264
Query: 65 aaaactatggactaactctcaaagaaaatagacacaaacacacaaacctgccctctcacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaactatggactaactctcaaagaaaatagacacaaacacacaaacctgccctctcacc 324
Query: 125 tacaactgcagcaccatgagaacattcttgtcgcctatctctgggagtccctaggtacct 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacaactgcagcagcatgagaacattcttgtcgcctatctctgggagtccctaggtacct 384
Query: 185 aaaaaaatattaggttaatccttcagtttgtaatttctgcagctaacaccgagaagggag 244
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 -aaaaaatattaggttaatccttccgtttgtaatttctgcagctaacaccgagaagggag 443
Query: 245 agcaaagacctcagagaagattgagctaccccgagcaatgcctagggaagttgataaaac 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 444 agcaaagacctcagagaagattgagctaccccaagcaatgcctagggaagttggtaaaac 503
Query: 305 ttggtcagcaacagacaaaagcaagatcagaaagctcaaagtctagcaaagcagttaagt 364
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttggtcagcaacagacaaaagcgagatcagaaagctcaaagtctagcaaagcagttaagt 563
Query: 365 gtaggaagagaccaggtcactttcgaactcggaggtcgcttgcagactggcagtgtgggt 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtaggaagagaccaggtcactttcgaactcggaggtcgcttgcagactggcagtgtgggg 623
Query: 425 ttgggcttgacttctgtgttgggtagtttttgtcaaattgacataaattagagtcttcgg 484
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 624 ttgggcttgacttctgtgttgggtagtttttgtcaaattgacataagttagagtcttggg 683
Query: 485 gg------gaaaaggaaacctcagttatagaactgcctccatcaaatagtcctgttggaa 538
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggtggggggaa--ggaaacctcagttatagaactgcctccatcaaatagtcctgttggaa 741
Query: 539 cccctgtggggccacattcttgattaatgatggatgtgcaaaggcccagctctctgtggg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cccctgtggggccacattcttgattaatgatggatgtgcaaaggcccagctctctgtggg 801
Query: 599 caatgccgcttctggggaggtctcctggattctataaaaaagcgaagctggtaaacagct 658
|| |||||||||||||| |||||||||| ||||||| ||||| |||||||||||||| ||
Sbjct: 802 cagtgccgcttctgggggggtctcctgggttctatacaaaagtgaagctggtaaacaact 861
Query: 659 ttcctccatggattctgcttctactcc 685
| ||||||||| |||||||||||||||
Sbjct: 862 tccctccatgggttctgcttctactcc 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1086
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1076
Effective search space: 728452
Effective search space used: 728452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_f10.g1 MSMg01no497_f10.g1 CHROMAT_FILE:
MSMg01no497_f10.g1 PHD_FILE: MSMg01no497_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:59 2005
(397 letters)
>mm_chr1_83270624_83271421
Length = 798
Score = 733 bits (379), Expect = 0.0
Identities = 394/399 (98%), Gaps = 3/399 (0%)
Strand = Plus / Minus
Query: 1 gatgcatagcataactgttccatggtctatagtgtctctggaattctggcatctagacag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gatgcatagcataactgttccatggtctatagtgtctctggaattctggcatctagaca- 540
Query: 61 t-gcttttccaggagattgtactgtaagcaggaataaactttgaattgtgggcaaggtaa 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcgcttttccaggagattgtactgtaagcaggaataaactttgaattgtgggcaaggtaa 480
Query: 120 ttctttccttcaggctgagaacatcagctcctttcataacttccactttctgcacactac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttctttccttcaggctgagaacatcagctcctttcataacttccactttctgcacactac 420
Query: 180 tcacaagagaccactgtactatccctttctttttagtccataatgaaaggtcagtaaaac 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tcataagagaccactgtactatccctttctttttagtccataatgaaaggtcagtaaaac 360
Query: 240 agaaaac-aaaaaaaacaaagttcaagctttagaagcatacagttcaagaaatgacctgc 298
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agaaaacaaaaaaaaacaaagttcaagctttagaagcatacagttcaagaaatgacctgc 300
Query: 299 ataatctttttagagatgtatgtctaccattcattatttacaaaaaggccttagattttt 358
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 299 ataatctttttagagatgtatgtctgccattcattatttacaaaaaggccttagattttt 240
Query: 359 ttttatatttaaccggtatatataaagtgaacatagcta 397
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ttttatatttaaccggtatatataaagtgaacatagcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 798
Length adjustment: 9
Effective length of query: 388
Effective length of database: 789
Effective search space: 306132
Effective search space used: 306132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
