NNCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTTTGTCCCTTAACTGACTCTAATGATTCAGAGCCTTTGA
TTGTATTTGGTCTTTGAGGAGAAAGATGAAAAAAACAATTACAATTTCTT
ATTCTGTTGAACAATAATTCTCAGTAATATCTGGATTGGCAAGGCACAGG
GTTAAGATTATAATAAAGGCTGCTTCAGATCTCCTTTCCCCAATCAAAAA
AAAAAAAAGTCATTTGCTACGTTTAAATCACCATATCATACCCAGTAGCC
AGCTTTGCGGGGAAGATTGACTTGTTGCAATATTCAGTCCTGCGGTTCAG
AAGATAAGCTAATAGCTGTGTGCAGCAAATCATCTGCAGACTGCAATTGA
GAAGTGTGCTTGATTGTTCCGTCTTTTGCAATTTGCATTCATCTCACAGA
CGAAGGTGCTTTGGGAACAGACACTAGTAATGAACAAAGATCAGAAGACT
TAAGATATTGCAGGTTTTGATGAGAAAGACTAGAGTATATTAACAGAATA
CTTTTTTTTTTACTTTCTATTTTCTACTGAGAGGATAATAATAGATGCAA
AAATTTTAAAAATGCTTCAGGCATTTGGAATTACTTTATTTTTCTCACCA
AAGTTGATGGGGGACACATTTATCAAACCAACTGTCATATCCCTGGAAGA
ATTTTTACTTGAAAAGGCATGCAAAATCCACATTTTCTAAATGGCTA

NNCCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGCTCTGTTCCCCC
TTTTTAAATAGAGTTATTTGGTTCTCTGGAGTCTAATTCCTTGAGTTCTT
TGTATATATTGGATATTAGCCTCTATGAGATATAAGTTGGGAAAGATCTT
TTCTTAGTATGTTGGTTTCCATTTTGTTGTATTGACAGTATCCTTTGCCT
TATAGAAGGTTGCAGTTTTATTTGTCGATTATTGATCTCAGAGCATAAAC
CATTAACGTTCTGTTCAGGAACTCTTCTGCTGTGTCCATGTGTTCAAGAA
TTTTCCATACATTCTTCGTATTAGATTCAGTGTATCTGTTTTGTTTTGGT
TTGGTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTGGTGNNNNTTNTTGTTTTTTTTGNA
ATTGANNTTTGTTNNGGATNTTATATTGGATTAGTTTGTAGTTTTGTAAA
TGTTGAATAGAGTTGAATTGTAGAATTTGTGGAGAGTGTTTTTGTTTTTA
GTAAATGATTTAAGGTTTTTTTTTAGAGGATTAATGANTATGGTGTTTTG
GTGTTTTTTTGGGATGAGAAGTTTAGTTTTGTGGAGTATTTAATTGGGAT
TGTGGGGAAATTAGGGAATGTTTTATTTATATTGTGTGGTAGATGGAGTG
GA

Query= MSMg01no497_g06.b1 MSMg01no497_g06.b1 CHROMAT_FILE:
MSMg01no497_g06.b1 PHD_FILE: MSMg01no497_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:03 2005
         (698 letters)



>mm_chr1_113924812_113925913
          Length = 1102

 Score = 1261 bits (652), Expect = 0.0
 Identities = 688/708 (97%), Gaps = 16/708 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttttgtccc---ttaactgactctaatgattcagagcctttgattgtatttgg 61
           |||||||||||| |     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattccttttggc--aaattaactgactctaatgattcagagcctttgattgtatttgg 254

                                                                       
Query: 62  tctttgaggagaaagatgaaaaaaacaattacaatttcttattctgttgaacaataattc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tctttgaggagaaagatgaaaaaaacaattacaatttcttattctgttgaacaataattc 314

                                                                       
Query: 122 tcagtaatatctggattggcaaggcacagggttaagattataataaaggctgcttcagat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcagtaatatctggattggcaaggcacagggttaagattataataaaggctgcttcagat 374

                                                                       
Query: 182 ctcctttccccaatcaaaaaaaaaaaaa-------gtcatttgctacgtttaaatcacca 234
           ||||||||||||||||||||||||||||       |||||||||||||||||||||||||
Sbjct: 375 ctcctttccccaatcaaaaaaaaaaaaaaaaaaaagtcatttgctacgtttaaatcacca 434

                                                                       
Query: 235 tatcatacccagtagccagctttgcggggaagattgacttgttgcaatattcagtcctgc 294
           ||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 435 tatcatacccagtagccagctttgcggggaagattgacaagctgcaatattcagtcctgc 494

                                                                       
Query: 295 ggttcagaagataagctaatagctgtgtgcagcaaatcatctgcagactgcaattgagaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggttcagaagataagctaatagctgtgtgcagcaaatcatctgcagactgcaattgagaa 554

                                                                       
Query: 355 gtgtgcttgattgttccgtcttttgcaatttgcattcatctcacagacgaaggtgctttg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtgtgcttgattgttccgtcttttgcaatttgcattcatctcacagacgaaggtgctttg 614

                                                                       
Query: 415 ggaacagacactagtaatgaacaaagatcagaagacttaagatattgcaggttttgatga 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggaacagacactagtaatgaacaaagatcagaagacttaagatattgcaggttttgatga 674

                                                                       
Query: 475 gaaagactagagtatattaacagaatac----ttttttttttactttctattttctactg 530
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 675 gaaagactagagtatattaacagaatacatttttttttttttactttctattttctactg 734

                                                                       
Query: 531 agaggataataatagatgcaaaaattttaaaaatgcttcaggcatttggaattactttat 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agaggataataatagatgcaaaaattttaaaaatgcttcaggcatttggaattactttat 794

                                                                       
Query: 591 ttttctcaccaaagttgatgggggacacatttatcaaaccaactgtcatatccctggaag 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttttctcaccaaagttgatgggggacacatttatcaaaccaactgtcatatccctggaag 854

                                                           
Query: 651 aatttttacttgaaaaggcatgcaaaatccacattttctaaatggcta 698
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 aatttttacttgaaaaggcatgcaaaatccacattttctaaatggcta 902


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1102
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1092
Effective search space:   751296
Effective search space used:   751296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)