TTTTTAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGTATATTTTCCATAACAGGGAATAATAAAGCATG
TTCTCCATGTATTATACGTTCTTCAAGCTGATGCATACATTAAATCAAGA
GTTATATTAAATTTGGGGTTGTATTAAATCTTAAAGGCATGTAATTAGGA
CAAGAGTGCAGTAACTAGGGGTTTCATATATATCTTTAAAAACTATTAGT
ACATTTTAATGTGACAACAGACAACATTATTAAAATCTTTCAGTGTTAAT
TGAATCCAATGACCAAACATATATAATTCTTCTGATAACATCTTGATTAT
ACAGAGGGATAAAAGTTAAAATAAATCAAAGCAAATGCACTCTAGAAAAC
CCACAGAGAAGTGGCAAGGCTGAAGCAATAGGAAGAAGAGTAATTGTGGT
TTGAAAGAATAGTAGAATTTACACCCCTTTCCCTTCATACGAAAAATACC
CAGTGAAGAGAAACAATCTCAACTCCTTGTAAGGACACCACCTGCCATAG
GACACAGATGAACACTATGATGAATAGATGGATATTGTGAAGTTGGTTTG
AAGGCTATATAGAAAAGACCACTGCCAACTATAAAAGTTGCCTAAAACTT
GCTGAGGACAGAATGCAATGGTAACACTCTAAAGTAGGATTTTACCATAT
TATCTTTGACACAGGAGGGAGGGTCTAGAGGCCTAN

CCAATTTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCACTATTTTAT
GCAAGTGGCTTTGCCCAGCTTAAACCATGGTGTTTGTATCTGGGCTGCTT
TAGGGGAATGAAGAGGATCCAAGGATCCCCATTTGGCTGACTTTTTCCAT
GCCCCAATGTTCCACTTGTAAGACAGAGGCACACAACCTCAGGTAAAAAT
TGTTACTATTCAATCTAGTAATCTACTCGATCCAGTCATTAATTTAGAAA
TCCTCCCTTTTGTGCTTACATTGGCCACTCTCTGTTGTAGCTGCCTCAAG
GGCTTATCACCGTGCTCTCCCCAATGACCATGTCGCATACATGTCACTTG
CTGCAAAGAGGACATTGAATTGGACAAAATTAGAACAAAGAATGAAGGCT
CTCATCGGAGGACTACAGCACTGGTGACAGAAAACGAGAGGAAATAAACG
GAAGCCAGTGGCATTGGAGCCAGACCTGAAGGTGGGGGATATTTGAACCT
GAAAAGATGAAGTATTCATAATGCACAGTGAAGAGGGAGCTTGATGGGGT
GTTTGGAGGGCTCCAGCCACAGTGCGCATTTCTGTGCATGGATGGGAAGG
TTGTTAACTGTCCAGCTTTAACATTTTTGAAGAGTTTATGAGAACTAAAG
ACTAGATTGATAGTCTAGTCCCATCGCTCATCAGCTGTTTAAACTT

Query= MSMg01no497_k08.b1 MSMg01no497_k08.b1 CHROMAT_FILE:
MSMg01no497_k08.b1 PHD_FILE: MSMg01no497_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:24 2005
         (577 letters)



>mm_chr1_61768023_61768999
          Length = 977

 Score = 1116 bits (577), Expect = 0.0
 Identities = 577/577 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaataataaagcatgttctccatgtattatacgttcttcaagctgatgcatacattaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gaataataaagcatgttctccatgtattatacgttcttcaagctgatgcatacattaaat 718

                                                                       
Query: 61  caagagttatattaaatttggggttgtattaaatcttaaaggcatgtaattaggacaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 caagagttatattaaatttggggttgtattaaatcttaaaggcatgtaattaggacaaga 658

                                                                       
Query: 121 gtgcagtaactaggggtttcatatatatctttaaaaactattagtacattttaatgtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gtgcagtaactaggggtttcatatatatctttaaaaactattagtacattttaatgtgac 598

                                                                       
Query: 181 aacagacaacattattaaaatctttcagtgttaattgaatccaatgaccaaacatatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aacagacaacattattaaaatctttcagtgttaattgaatccaatgaccaaacatatata 538

                                                                       
Query: 241 attcttctgataacatcttgattatacagagggataaaagttaaaataaatcaaagcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 attcttctgataacatcttgattatacagagggataaaagttaaaataaatcaaagcaaa 478

                                                                       
Query: 301 tgcactctagaaaacccacagagaagtggcaaggctgaagcaataggaagaagagtaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgcactctagaaaacccacagagaagtggcaaggctgaagcaataggaagaagagtaatt 418

                                                                       
Query: 361 gtggtttgaaagaatagtagaatttacacccctttcccttcatacgaaaaatacccagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtggtttgaaagaatagtagaatttacacccctttcccttcatacgaaaaatacccagtg 358

                                                                       
Query: 421 aagagaaacaatctcaactccttgtaaggacaccacctgccataggacacagatgaacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aagagaaacaatctcaactccttgtaaggacaccacctgccataggacacagatgaacac 298

                                                                       
Query: 481 tatgatgaatagatggatattgtgaagttggtttgaaggctatatagaaaagaccactgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tatgatgaatagatggatattgtgaagttggtttgaaggctatatagaaaagaccactgc 238

                                                
Query: 541 caactataaaagttgcctaaaacttgctgaggacaga 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 caactataaaagttgcctaaaacttgctgaggacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_k08.g1 MSMg01no497_k08.g1 CHROMAT_FILE:
MSMg01no497_k08.g1 PHD_FILE: MSMg01no497_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:25 2005
         (614 letters)



>mm_chr1_61588759_61589772
          Length = 1014

 Score = 1102 bits (570), Expect = 0.0
 Identities = 603/614 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcactattttatgcaagtggctttgcccagcttaaaccatggtgtttgtatctgggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcactattttatgcaagtggctttgcccagcttaaaccatggtgtttgtatctgggct 260

                                                                       
Query: 61  gctttaggggaatgaagaggatccaaggatccccatttggctgactttttccatgcccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttaggggaatgaagaggatccaaggatccccatttggctgactttttccatgcccca 320

                                                                       
Query: 121 atgttccacttgtaagacagaggcacacaacctcaggtaaaaattgttactattcaatct 180
           ||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 321 atgtttcacttgtaagacagaggcacacaacatcaggtgaaaattgttactattcaatct 380

                                                                       
Query: 181 agtaatctactcgatccagtcattaatttagaaatcctcccttttgtgcttacattggcc 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 agtaatctactcgatccagtcattaatttagaaatcctcctttttgtgcttacattggcc 440

                                                                       
Query: 241 actctctgttgtagctgcctcaagggcttatcaccgtgctctccccaatgaccatgtcgc 300
           || |||||| || |||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 441 acactctgtcgtggctgcctcaagggcttatcaccatgctccccccaatgaccatgtcac 500

                                                                       
Query: 301 atacatgtcacttgctgcaaagaggacattgaattggacaaaattagaacaaagaatgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacatgtcacttgctgcaaagaggacattgaattggacaaaattagaacaaagaatgaa 560

                                                                       
Query: 361 ggctctcatcggaggactacagcactggtgacagaaaacgagaggaaataaacggaagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ggctctcatcggaggactacagcactggtgacagaaaacgagaggaaataaacgggagcc 620

                                                                       
Query: 421 agtggcattggagccagacctgaaggtgggggatatttgaacctgaaaagatgaagtatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtggcattggagccagacctgaaggtgggggatatttgaacctgaaaagatgaagtatt 680

                                                                       
Query: 481 cataatgcacagtgaagagggagcttgatggggtgtttggagggctccagccacagtgcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cataatgcacagtgaagagggagcttgatggggtgtttggagggctccagccacagtgcg 740

                                                                       
Query: 541 catttctgtgcatggatgggaaggttgttaactgtccagctttaacatttttgaagagtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catttctgtgcatggatgggaaggttgttaactgtccagctttaacatttttgaagagtt 800

                         
Query: 601 tatgagaactaaag 614
           ||||||||||||||
Sbjct: 801 tatgagaactaaag 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)