BAC Information

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BAC

Clone NameMSMg01-497L23
Chromosome1 (Build37)
Map Location 158,494,704 - 158,590,086
singlet/doubletdoublet
Overlap geneAbl2, Tor3a
Upstream geneAcbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026
Downstream geneC530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497L23.T7 (MSMg01no497_l23.b1)MSMg01-497L23.TJ (MSMg01no497_l23.g1)
ACCAG574239AG574240
length778765
length of high quality
(start - end)		535 (53 - 587)426 (80 - 505)
definitionCHROMAT_FILE: MSMg01no497_l23.b1 PHD_FILE: MSMg01no497_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:33 2005CHROMAT_FILE: MSMg01no497_l23.g1 PHD_FILE: MSMg01no497_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,494,704 - 158,495,235)(158,589,674 - 158,590,086)
sequence
NAATTGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTAATAGATGTCTAAGGCATTCTCCCTAGTTTATTAGT
ATATTATGTAATTTATAAGAACCTTTTTATTTCTAGATTATCTATCAGGC
CTGTGCTGTAAGAACTTTTAGCTGTGGAGCTATCTTGCCAGCCCAGAGCA
TTTCCTCTCTTTCTATATTAGTGTAGCCTAGACTTACTAATTGTACATGC
TAATGACTCTTAAGAGAATTTTTAGGTATAATTTAGATAGAACTGCTTTT
CAAAGCTGTTGATGCTCAGGTAATTGTTAGTGAACATCTTCATTTCAGAA
GTTATTCTGCCTTGGCCTGGTCTCCATCTGAGAAGATCCTCTTGTCCCCT
CCTGTCTCTGAGCACTGGAGTTAGAGGAAGGTACCATCATGCCTGGCGAA
AAGCTTTATTTTATCATTTTTAATTATGTGTAAGTGTCCTGAGTAGGTAT
GTGAACATTAATGCAGGTGTCTATAGAGATCAGACACTTTGGACCCCTTG
GAGTTGAGCTGCAGGTGCTACGGGCCATGGTGGAAGCCACAGTCAGGTGT
GTTCTTTAGGAGCAGCATCTGTTCCTGACCACCTACCTAGCCATCTCTCT
AGACACAGCCACCAATCTTTACATTTTTTAATTTTTAATGGTAAAAAACT
TTGTGTGTGAAAGTAAGATATTTTGTTGCACCAATCTTTTTTATCAGCCC
CTGGCTTTTGGGGTTACATGCNAACCCT

NTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTACCCAGGGGCTCTTACA
CAAATGAGGCAGTGGTTTCCAGCAACCTGTTGCAGGCCAGGCGTGCACAA
GGCCTTCCATCAAGGAGAGGCCATGAGCCAGACCACCACAGTCCCTCTCC
AGCCACGCAGAACCTCAACCACCCCTCCTGAGGGTGCCCCCAAATTAGCC
ACCTCCAGCCCCTGCCCCGAGGTTCTCTGGTCTTCTGGTTATGAGAGAGC
AATGTGTTTGAGATCTGAGTCTCTAGACTTGGTTTCTAGAACAAACTTCA
GTTTGCCTCCCCTTTGTGGTAAGGATTCTTGCATGTGTGTTGTGTGTGTG
TGTGCGCTAGCTTGTGTGGAAGTTGACACTGGGTATCCTCTCTAGCTTGT
TTGCTTTTACCCCCCCCCCCNTTTTTTTTTTTTTTTTTTTTTTGGCCTTT
TGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGT
AGACCAAGCTGGGCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCTCGAG
TGCTGGGATTAAAGGCATGCACCACCACGCCCGGCTACTTTTTCCCTTTT
TAAAACAGGGGCTCCCTGTGTGGGCCCCGCTGGGCCGGAAATTGGGATGT
AAAGAATGCTGGCCTGGAATTCACAAATACATGGACCCCTGTCCCCCGAG
GGAATTAAGGGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_l23.b1 MSMg01no497_l23.b1 CHROMAT_FILE:
MSMg01no497_l23.b1 PHD_FILE: MSMg01no497_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:33 2005
         (535 letters)



>mm_chr1_158494500_158495435
          Length = 936

 Score = 1021 bits (528), Expect = 0.0
 Identities = 531/532 (99%), Gaps = 1/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaatagatgtctaaggcattctccctagtttattagtatattatgtaatttat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaatagatgtctaaggcattctccctagtttattagtatattatgtaatttat 264

                                                                       
Query: 65  aagaacctttttatttctagattatctatcaggcctgtgctgtaagaacttttagctgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaacctttttatttctagattatctatcaggcctgtgctgtaagaacttttagctgtg 324

                                                                       
Query: 125 gagctatcttgccagcccagagcatttcctctctttctatattagtgtagcctagactta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagctatcttgccagcccagagcatttcctctctttctatattagtgtagcctagactta 384

                                                                       
Query: 185 ctaattgtacatgctaatgactcttaagagaatttttaggtataatttagatagaactgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaattgtacatgctaatgactcttaagagaatttttaggtataatttagatagaactgc 444

                                                                       
Query: 245 ttttcaaagctgttgatgctcaggtaattgttagtgaacatcttcatttcagaagttatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttcaaagctgttgatgctcaggtaattgttagtgaacatcttcatttcagaagttatt 504

                                                                       
Query: 305 ctgccttggcctggtctccatctgagaagatcctcttgtcccctcctgtctctgagcact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgccttggcctggtctccatctgagaagatcctcttgtcccctcctgtctctgagcact 564

                                                                       
Query: 365 ggagttagaggaaggtaccatcatgcctggcgaaaagctttattttatcatttttaatta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggagttagaggaaggtaccatcatgcctggcgaaaagctttattttatcatttttaatta 624

                                                                       
Query: 425 tgtgtaagtgtcctgagtaggtatgtgaacattaatgcaggtgtctatagagatcagaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtgtaagtgtcctgagtaggtatgtgaacattaatgcaggtgtctatagagatcagaca 684

                                                               
Query: 485 ctttggaccccttggagttgagctgcaggtgctacggg-ccatggtggaagc 535
           |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 685 ctttggaccccttggagttgagctgcaggtgctacggggccatggtggaagc 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space:   486150
Effective search space used:   486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_l23.g1 MSMg01no497_l23.g1 CHROMAT_FILE:
MSMg01no497_l23.g1 PHD_FILE: MSMg01no497_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:33 2005
         (426 letters)



>mm_chr1_158589496_158590321
          Length = 826

 Score =  717 bits (371), Expect = 0.0
 Identities = 404/419 (96%), Gaps = 11/419 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttacccaggggctcttacacaaatgaggcagtggtttccagcaacctgttgcaggcca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||     ||
Sbjct: 591 acttacccaggggctcttacacaaatgaggcagtggtttccagcaacctgttg-----ca 537

                                                                       
Query: 61  ggcgtgcacaaggccttccatcaaggagaggccatgagccagaccaccacagtccctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ggcgtgcacaaggccttccatcaaggagaggccatgagccagaccaccacagtccctctc 477

                                                                       
Query: 121 cagccacgcagaacctcaaccacccctcctgagggtgcccccaaattagccacctccagc 180
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 476 cagccacgcagaaccacaaccacccctcctgagggtgcccccaaattagccacctccaac 417

                                                                       
Query: 181 ccctgccccgaggttctctggtcttctggttatgagagagcaatgtgtttgagatctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ccctgccccgaggttctctggtcttctggttatgagagagcaatgtgtttgagatctgag 357

                                                                       
Query: 241 tctctagacttggtttctagaacaaacttcagtttgcctcccctttgtggtaaggattct 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 356 tctctagacttggtttctagaacaaacttcagtttgccttccctttgtggtaaggattct 297

                                                                       
Query: 301 tgcatgtgtg-t---tgtgtgtgtgtgtgcgctagcttgtgtggaagttgacactgggta 356
           |||||||||| |   |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 296 tgcatgtgtggtgtgtgtgtgtgtgtgtgtgctagcttgtgtggaagttgacactgggta 237

                                                                      
Query: 357 tcctctctagcttgtttgcttttacccccc-cccccntttttttttttttttttttttt 414
           |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 236 tcctctctagcttgtttgcttttacccccctccccc-tttttttttttttttttttttt 179


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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