BAC Information

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BAC

Clone NameMSMg01-498K01
Chromosome1 (Build37)
Map Location 171,505,683 - 171,505,871
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383613, Nuf2
Downstream geneRgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498K01.T7 (MSMg01no498_k01.b1)MSMg01-498K01.TJ (MSMg01no498_k01.g1)
ACCAG574905AG574906
length812743
length of high quality
(start - end)
193 (53 - 245)510 (81 - 590)
definitionCHROMAT_FILE: MSMg01no498_k01.b1 PHD_FILE: MSMg01no498_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:45 2005CHROMAT_FILE: MSMg01no498_k01.g1 PHD_FILE: MSMg01no498_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACAAGGGCCTTGTGGTCCCATAGTCACTCTGTGGAAGT
TTCAGAGAGTGAGTACCTGTTGAGAAGAGAGACCATGGCAAAAATACCCT
GACCGGAAGTACGGTTTAAAAAATTCTTCAGTTTTCATCTGTTAATGAAA
TTCACACATGCTATTTAGATATCTCCTCCAGGGACAGCAGAAAAANTTCT
AAAAATCTCTCTAGGGGAACTAAGCATTTAAATTCCCATAACTTGTTTCT
CTGCAAGCAAGTTAATCAACTCAGACGATGANNGAAGGAAAGATTTTCTT
TTTATCCAAATATTACCAAAGCCCTGGCTTTCTTCCGGGAAGACCTGGGT
CCTCCTCCCCCAGGGGCTTTTTGGGGGGGAAATTTGGGTTAAAAAATTTT
TTTTTTTGTTTTTTAAAAAAAAACCCCCGGTTTTTAAAGGGGTTTAAACC
CCTTTAAAAAAGGGAATGGGGACCATTTTTTTTATTCCCCCCCTGGCGCC
CCAAGNNNNNNNNNAAAAGGGTCNGAGTGGTGTTTTTTTNNNNTTTTTGG
GGGAAAAAATATAAAAAAATTTTTTTTTTAACACGCGGCGCCAAAAAATA
TTTTTTTTCTTAACCCCCCCTTTTTGGTGTAAAAAAAAACAATGTGTTGT
GTGGGGGGGGTGAATAAATAAGGGGGGGGGAAATTTTTCTCCCCCCCCTC
CTTTTTTTTATGCGGAGGGTGTTTCCCCCCCACCTAAAAAAAATTTGGGT
GGTTTGTTTTTT
TTTCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGATGGAAATGGAGAGG
AGCCTGTGAAAAAGAAGGTCCAGTGACAGGCCCAAAGTGGGATCCAGCTC
AAGGGGCAGTCCCAAGGCCTGACACTACTACTGAGGCTATGAAGCGCTCA
CAAAAAGGGATCTAACATGACTGCCCTCCGAAAGACCCAACAAGCAGCTG
AAAGAGTCAGATGCAGATATTTGCACCCAACCAATGGACAGAAGCAGCTG
ATCCCTGTTGTTGAATTAGGGATGGCTGAAAGAAGCTGAGGAGGACGATC
CTGTAAGGGGACTAGCAATCTCAATTAATCTGGATCCCTGAGATCTCTCA
AACACTGGACCACCAAACAGACAGCATACACCAGCAGATATGAGGCCCCC
AACACACATAGAGGACTGCCGGGTCTGTGTTCATTCAGAGATGATACACC
TAACCCTCAAGAGAGTGGAGGCCCCAGGGAGTTTAGAGATCAGGTGGGGT
GGGGGCATCCATGTGGAGACAGGGTGGGGGAGGGGAGGAGTTTTNNNTTT
NNTTNNTNTTTTTTTTNTTTTTTTTTTTTTNNTNNNNNTTNTTTGTTTTT
TTTTTTNNTTTTTTTTTTTGTTCGTTTTTTTTTTGGTTTTTTTTTTTTGG
TTTTTTGCGTTTTTGTTTTGTTTNTGTCTTTTTTGTTTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_k01.b1 MSMg01no498_k01.b1 CHROMAT_FILE:
MSMg01no498_k01.b1 PHD_FILE: MSMg01no498_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:45 2005
         (193 letters)



>mm_chr1_171505479_171506071
          Length = 593

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaagggccttgtggtcccatagtcactctgtggaagtttcagagagtgagtac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaattcacaagggccttgtggtcccatagtcactctgtggaagtttcagagagtgagtac 334

                                                                       
Query: 65  ctgttgagaagagagaccatggcaaaaataccctgaccggaagtacggtttaaaaaattc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctgttgagaagagagaccatggcaaaaataccctgaccggaagtacggtttaaaaaattc 274

                                                                       
Query: 125 ttcagttttcatctgttaatgaaattcacacatgctatttagatatctcctccagggaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttcagttttcatctgttaatgaaattcacacatgctatttagatatctcctccagggaca 214

                    
Query: 185 gcagaaaaa 193
           |||||||||
Sbjct: 213 gcagaaaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)