BAC Information

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BAC

Clone NameMSMg01-498N20
Chromosome1 (Build37)
Map Location 40,096,614 - 40,097,035
singlet/doubletsinglet
Overlap genenone
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4
Downstream geneIl1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498N20.T7 (MSMg01no498_n20.b1)MSMg01-498N20.TJ (MSMg01no498_n20.g1)
ACCAG575085AG575086
length799903
length of high quality
(start - end)		616 (47 - 662)---
definitionCHROMAT_FILE: MSMg01no498_n20.b1 PHD_FILE: MSMg01no498_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:05 2005CHROMAT_FILE: MSMg01no498_n20.g1 PHD_FILE: MSMg01no498_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCATTGGCTCAAGAATCCTGGAATAATTCTTGGGGAAAAAAAA
AGGAGTCATTACATCCAAATCCTTTCTTTCTATTGCCAAGGGCACAGAAG
TTTTGTTTGGTTTTGTCTCTTTGTTTTGCTATCTTTGGAACTTTGCCTTG
ATACTGAAGAATGTGGTAGGGATTTACCACGACTGCCTACAAGGGATAAT
GGCATATGAAAAGCCTTTAAGGCAGTGGTTCTCAATCTCCCAAACACAGC
AACCCTCTAATACAGTTCCTTGTGCTACGGTGACCCCCAACAATAAAATT
ATTTTTGTTGCTACTTCATAACTGTACATTTGCTACTGTTGTGTATGAAT
CATAGTGTAAATCTCTGATATGCAACCCCTGTGAAAGAGTTGTTTGACCC
CAGGGGGTTGCAACCCACAGCTTGAGAGCTGTTGCCCTAATGTAAAATGT
TATCAATCATTTCTGTTACCAAATTTCCATGAGTGTGTTTCATTGATCTC
ATCTTTATATAGAACTTTCTAGTCTTGCTCCCTTAAACACGGCCATAAAT
GTTCCAAGGTAACTCTAATAGGTTCTTTAGTACATTTTACTATATTATTT
GTATCCCTTCCTGAGGATATCTGATAATTTTATGGCATGTTGAACATTAT
ATATGGGAAAATTATAGATACCATTGAAGGTTTTCTTATATTGTTCTTTC
TTTACAGAGAATCAATTTTTTTTTAAATTTTTTTTTTTCCTGTCAAGCC

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTGAAGAGATTGTACTCTGT
CCCAGAAGAATTTAGTGGTACTCACTCCCTGGGGTGGAGGTGGGGGGTGG
GGGTNNNCCCTNCCTTTCCCCCTCCCCCCCCCCCCCCTCTTTCCCCCCTC
CCCCCCCTCTTTTCCTTTTCCCCCCTTTTTCCCCCCCCCTTCCCCCCCCC
CCTTCCCCCCTCCTTTTTCTTCCCCCTCCTCCCCTTCTTCCTCCTCCCCC
CTTCCTCCCCCTCCCCCCCCCCCCNNCCCCTCTTTTTTCTTTTNCCCCNC
NCCCCTTCCCCTCCCTCCCCCCTTTCTTTCCTCCCTCCCCCCCCTTCCTT
TTCCCCTTCCTCCCCCCCCCTTCTTTCCTTTCCCCCCCCCCCGTCCCCCC
TCTTTTCCTTCCCCCCCCCCCCCCCTTCCCCCCCTTTCCCCCTCCCTCTT
TCCTCTCTCTCTCCTCTCCTCCTCCTCTCCTCCCCTTCTTCCTTCTTTCC
CCCTTTCCCCCCCTTTCCCCCCCCCCCCCCCTCTCTTCTCCCCTTCTCCC
CCTCCTTCCCCCTCTTCTCCCCCCCTCCTCCTCTCTCCCCCTCTCTCCTT
TTTCTTCTTCTCCTTCCCCTCTCCCTTCCCTCCCCTTTTCCCTCCTCCTC
TCCTCTCTTCTCTTCCCCCCTCTCCCCCCTTCCTCCCCCGCCCCCTCTCC
CCCTCCTTTTTTCCCCCTCCCTTTCTCCCCCCTCCCCCCCTCTCTCTCTC
CCCCCCCCTCCTTTTTCTCCCCCCTTCTCCTCCCCCCCCCCTCTTTTCCC
CCCTCCCCTTTTCCCCCCCCCCCTTCTCTCTCCCCCCCTTTCTCCTCTCT
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_n20.b1 MSMg01no498_n20.b1 CHROMAT_FILE:
MSMg01no498_n20.b1 PHD_FILE: MSMg01no498_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:05 2005
         (616 letters)



>mm_chr1_40096614_40097625
          Length = 1012

 Score =  743 bits (384), Expect = 0.0
 Identities = 414/426 (97%), Gaps = 4/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccattggctcaagaatcctggaataattcttggggaaaaaaaaaggagtcatt 64
           ||||||||||||||| ||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 422 gaattcaccattggcacaagaatcctggaataattcttgg----aaaaaaaggagtcatt 367

                                                                       
Query: 65  acatccaaatcctttctttctattgccaagggcacagaagttttgtttggttttgtctct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acatccaaatcctttctttctattgccaagggcacagaagttttgtttggttttgtctct 307

                                                                       
Query: 125 ttgttttgctatctttggaactttgccttgatactgaagaatgtggtagggatttaccac 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 306 ttgttttgctatctttggaactttgccttgatactgaagaatgtggtgggggtttaccac 247

                                                                       
Query: 185 gactgcctacaagggataatggcatatgaaaagcctttaaggcagtggttctcaatctcc 244
           |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 246 gactgcctacaagggataatggtatatgaaaagcccttaaggcagtggttctcaatctcc 187

                                                                       
Query: 245 caaacacagcaaccctctaatacagttccttgtgctacggtgacccccaacaataaaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 caaacacagcaaccctctaatacagttccttgtgctacggtgacccccaacaataaaatt 127

                                                                       
Query: 305 atttttgttgctacttcataactgtacatttgctactgttgtgtatgaatcatagtgtaa 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 126 atttttgttgctacttcataactgtacgtttgctactgttgtgtatgaatcatagtgtaa 67

                                                                       
Query: 365 atctctgatatgcaacccctgtgaaagagttgtttgaccccagggggttgcaacccacag 424
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 66  atctctgatatgcaacccctgtgaaagagttgtttgactccagggggttgcaacccacag 7

                 
Query: 425 cttgag 430
            |||||
Sbjct: 6   gttgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1012
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1002
Effective search space:   607212
Effective search space used:   607212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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