BAC Information

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BAC

Clone NameMSMg01-499A08
Chromosome1 (Build37)
Map Location 101,064,169 - 101,064,532
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499A08.T7 (MSMg01no499_a08.b1)MSMg01-499A08.TJ (MSMg01no499_a08.g1)
ACCAG575204AG575205
length756753
length of high quality
(start - end)
249 (68 - 316)380 (321 - 700)
definitionCHROMAT_FILE: MSMg01no499_a08.b1 PHD_FILE: MSMg01no499_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:18 2005CHROMAT_FILE: MSMg01no499_a08.g1 PHD_FILE: MSMg01no499_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACAT
CTTTACTACAGACTGCAAAGGGACTGTCAACACTGGGCTTAGTTTGATCT
AAAATACCTCTTCCATAGTAACTCACTTTGTCCAACAAGGCCACATGTAT
TTCCCAGAAGTCCATACCTCCTAAAATTGCTGCTTCTTGTGAACCAATCA
TTCAAATACATGAATCTTCAGGGCCCATACTTATTCAAAACAGCATATTG
TGGCATGTATTTTAATTGATAGAGATGTTTCCCCTATTCCCGTCATCTGT
ACAAATCGAATGATTTCTGCTGTCCTTTGCCTATAGCGGGGGAAGGATCT
TCTCTTTAACCTAGAAGACTGGGTTAAAGATTCCCATACTTTGTAACTTC
CAAAGCAGCTCAGTGTGTAAAGTGAGATGTTTGAATACCCACATTTTTCT
ATGGATTCAATTCTTTCAGTAATCAGTATGACTCTGATTGGTTTTAAAGC
CAAATAGTTTATATTTTTGACGCTAGGAGTGTGAAATAAAGTATCACAAC
TGCTCTTCTCAATGCTCTAAAGGATAGTCTTTCCTTCAGTGTTTTGTGAC
AGCATGATCTAAAGCCAATGACTCCACTTTTCGTGAGTTACATTCCTGTG
GTATTCCTCCAACTTCTCCTTGTAAGTTTCCTGTAAATGGATTTTTAAAG
TGATGGATTGTAATTAATGGTAATATGACAATAGGGCCCAATTGTTTACT
AAATAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TGCAATATACAACGGAGGATCCAGAGAAAGATGTCAGCTACTATACAGCT
GGAGTAAGCCTCCCCACGTGGGTATTGAGAATGGAACTTCTATCCTCTGG
AAGAGCTATAACAGTTCTTAACATCTGATAGTCTCCCAGATCTGCTTTGC
ACATTTCACTGAAGAACAATGCCTGAAAATGCCATACGCCTTTTATCTAT
TCACTCCTAAATGGAAAGTTTGACATTTTGATTCTTTACAATACTGGTTA
TGCTTATGCTTCTTATTTTGGTAGAACTCTCCAACAAGGACATGAATGAA
ACTGGGATTTCTTCTGTCAGAGAAATTATTGATTACTCAAATATTGGTCC
CTTTAATCTTTGCTCTTCACATTTACTAGAAATTCTTTGTTAAGAAATAA
GTCCTCAAATCTCATCATGTATCCCGCATTGACGTTCAGATAAACCCCAA
GTCTGATGTCCTAGGATGCAGACTTCTTAAGATTTTTGGGAAACAAAATT
ATCTTCTTAACTACTCTGCTTCTGGTACTTTCACTAATTTTAATGGACTT
TTTGTTTTGGAATACATGGAATGTAGCCTGTGCTTGTACATGTGCATGTG
CATGTGTGTGTGTCGTTGTGTGTGTGTGATGGTGATGGTGATGGTGATGG
TGAATGGTGGTGNACCCCCCCTCCCTTCCCCCGTCTTTACTTTTTCCCCT
TGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_a08.g1 MSMg01no499_a08.g1 CHROMAT_FILE:
MSMg01no499_a08.g1 PHD_FILE: MSMg01no499_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:18 2005
         (380 letters)



>mm_chr1_101064026_101064805
          Length = 780

 Score =  625 bits (323), Expect = 0.0
 Identities = 357/371 (96%), Gaps = 8/371 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagaactctccaacaaggacatgaatgaaactgggatttcttctgtcagagaaattatt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtagaattctccaacaaggacatgaatgaaactgggatttcttctgtcagagaaattatt 448

                                                                       
Query: 61  gattactcaaatattggtccctttaatctttgctcttcacatttactagaaattctttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gattactcaaatattggtccctttaatctttgctcttcacatttactagaaattctttgt 388

                                                                       
Query: 121 taagaaataagtcctcaaatctcatcatgtatcccgcattgacgttcagataaaccccaa 180
           ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 387 taagaaataagtcttcaaatctcatcatgtagcccacattgacgttcagataaaccccaa 328

                                                                       
Query: 181 gtctgatgtcctaggatgcagacttcttaagatttttgggaaacaaaa-ttatcttctta 239
           |||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct: 327 gtctgatgtcctaggatgcagacttcttaagacttttgggaaacaaaactt-tcttctta 269

                                                                       
Query: 240 actactctgcttctggtactttcactaattttaatggactttttgttttggaatacatgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 actactctgcttctggtactttcactaattttaatggactttttgttttggaatacatgg 209

                                                                       
Query: 300 aatgtagcctgtgcttgtacatgtgcatgtgcatgtgtgtgtgtcgttgtgtgtgtgtga 359
           |||||||| ||||||||||||||||||||||  ||||||||    |||||||||||||||
Sbjct: 208 aatgtagcttgtgcttgtacatgtgcatgtg--tgtgtgtg----gttgtgtgtgtgtga 155

                      
Query: 360 tggtgatggtg 370
           |||||||||||
Sbjct: 154 tggtgatggtg 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)