Query= MSMg01no499_d05.b1 MSMg01no499_d05.b1 CHROMAT_FILE:
MSMg01no499_d05.b1 PHD_FILE: MSMg01no499_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:32 2005
(565 letters)
>mm_chr1_45357279_45358242
Length = 964
Score = 984 bits (509), Expect = 0.0
Identities = 551/565 (97%), Gaps = 1/565 (0%)
Strand = Plus / Minus
Query: 1 gttataaatttatttttaaaagagtaaagagtaaacaatagggctggttcagaaaaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 764 gttataaatttatttttaaaagagtaaagagtaaacaatagggctggttcacaaaaaaat 705
Query: 61 tgaaagcagtaaaacttgtgttctcaaatgaaggaccacttaagagtcacaattaaaaaa 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgaaagcagtaaaacttatgttctcaaatgaaggaccacttaagagtcacaattaaaaaa 645
Query: 121 tgaaactaacctggaaatttacaaaactatcacaaaatttttgttaatttcaaagtaaat 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 644 tgaaactaacatggaaatttacaaaactatcacaaaatttttgttaatttcaaattaaat 585
Query: 181 tacatattaaacacaaaatgtgcctattttaaaacctattttaagactaaaagttaaatg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tacatattaaacacaaaatgtgcctattttaaaacctattttaagactaaaagttaaat- 526
Query: 241 gggtatatgaaagaatactacaatataataaattaaaataagttttacacattttgttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gggtatatgaaagaatactacaatataataaattaaaataagttttacacattttgttca 466
Query: 301 aattgttttcaatgctattaaccaaatttccttgaggctagagcattctaaaagggaaaa 360
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 465 aattgttttcaatgctattaaccaaatttccttgaggctaaagcattctaaaagagaaaa 406
Query: 361 aacaaaacaaaacaacagcagcaaatatacagactctcaaatcaaagtattaaaatgacc 420
|||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||
Sbjct: 405 aacaaaacaaaacaacagcaacaaatatacaaactctcacatcaaagtattaaaatgacc 346
Query: 421 ttattatcacacaaatgtagacttcttacttgaattgcaaatgtttaaagctttcttttg 480
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 345 ttattatcacacaaatgtagactccttatttgaattgcaaatgtttaaagctttcttttg 286
Query: 481 tgactagatttcttggcttaaatctcctagagaactgtggaaacttcaactgatttatgt 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 285 tgactagatttcttggcttaaatctcctagagaactggggaaacttcaactgatttaggt 226
Query: 541 gagtatgccatggatatttgcaagg 565
|||||||||||||||||||||||||
Sbjct: 225 gagtatgccatggatatttgcaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_d05.g1 MSMg01no499_d05.g1 CHROMAT_FILE:
MSMg01no499_d05.g1 PHD_FILE: MSMg01no499_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:32 2005
(640 letters)
>mm_chr1_45205450_45206489
Length = 1040
Score = 1214 bits (628), Expect = 0.0
Identities = 637/640 (99%)
Strand = Plus / Plus
Query: 1 ctgaaaatacttatccagatggttggtctaaatgtgaataaacatctataaataattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaaaatacttatccagatggttggtctaaatgtgaataaacatctataaataattcat 260
Query: 61 tttcaaagatttcaagattgctagaatcaatatgaagtcccaaataatcaatataataaa 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tttcaaagatttcaagattgctagaatcaatatgaagtcctaaataatcaatataataaa 320
Query: 121 caaactcatctagtataaagcccaatacacatatttttataaaaattaggtacattcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaactcatctagtataaagcccaatacacatatttttataaaaattaggtacattcaga 380
Query: 181 tctatattatatttacaacagtttataaatttttattggaatttgaaattttaataaaac 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctataatatatttacaacagtttataaatttttattggaatttgaaattttaataaaac 440
Query: 241 caataaaattttatcagtgaattaagtttacagaaagactcttcaatctatgatcctgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caataaaattttatcagtgaattaagtttacagaaagactcttcaatctatgatcctgtg 500
Query: 301 actatattattttcaacctgaattgtttatcttaggcttcctcatacacaaacgttattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actatattattttcaacctgaattgtttatcttaggcttcctcatacacaaacgttattc 560
Query: 361 cttagggtcactgatcgttaatttgttttaatcttctcttagtggtgatatccacttgga 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttagggtcactgatcattaatttgttttaatcttctcttagtggtgatatccacttgga 620
Query: 421 tatcatcatgttaaatataaaaagaaacataaatttttatttcttatatgtagagaatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatcatcatgttaaatataaaaagaaacataaatttttatttcttatatgtagagaatca 680
Query: 481 atttaagaattgattcaaataaacagtatttgaaagattgtatgggagtttagaaagaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttaagaattgattcaaataaacagtatttgaaagattgtatgggagtttagaaagaag 740
Query: 541 aaggaacacagagcaggaggagagaaatgtccaggacatggtaacagaagtgactaggat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggaacacagagcaggaggagagaaatgtccaggacatggtaacagaagtgactaggat 800
Query: 601 caaagtagatgatatatatgcactggaaaaccatgatgaa 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaagtagatgatatatatgcactggaaaaccatgatgaa 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
