BAC Information

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BAC

Clone NameMSMg01-499H23
Chromosome1 (Build37)
Map Location 51,737,033 - 51,737,545
singlet/doubletsinglet
Overlap genenone
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499H23.T7 (MSMg01no499_h23.b1)MSMg01-499H23.TJ (MSMg01no499_h23.g1)
ACCAG575565AG575566
length712721
length of high quality
(start - end)		203 (22 - 224)513 (57 - 569)
definitionCHROMAT_FILE: MSMg01no499_h23.b1 PHD_FILE: MSMg01no499_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:53 2005CHROMAT_FILE: MSMg01no499_h23.g1 PHD_FILE: MSMg01no499_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGACTCACTATAGGTCGAGGATCCGCGGAATTCAATTCCCAGCCCCACAT
AATGGCTCTGTAATGGGATCTGATGTCCTCTTCTGGTGTGTCTGAAGGCA
GCTACAGTGTACTCATGTAAATAAAATAAATAATTCTTAGAAAGAAAGAA
AGAAAGAGAGAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGGNNATAAGAAAAGAAATAGTAAAAGAAA
AAANNNNNNNNGTNNNNNNNNNNNNNNNNNTNNTNNNTNTNTNTNNNTTT
TTTTTTTTTTTTTTNNTTTTTNTTNNNTTTNTNTTTTTNTTTTTTTTTTN
NTTTTTTTTTTTTTTTTTNTTTTTTTTTTTNTTTTTTTNTTTTTTNTNNT
TTNTTTTTTTTTTTTTTTTTTTTNTTTTTTTNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTNTCTTTCTT
TCTTCCCCCCTTCCCCCCTTCCCCCCTCCTCCCTCCTTCCNCCCNTCTCT
CCTTCTCCTCTCTNCCNTCTTTCCTTCTTCCTCCTTCCTCTCTACCCATC
AATACNTNACCCANAAATAACNAANACATAATNAAAAAAAAAAATTACAA
AATAATAATAAACCAATTAATAAATCATTAATTAACAATTAATTAGNTAA
ATAAANTAATAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCATTCAATTCGTGTCATTTGTAAGAAAATGAATGGAACTGGA
GATCATCATCAAACAAGTTAAGCCAGTCTCAGAAAGATATATCTTGTTTA
ATTTTTCTCACCGATGGTTCTTAGGTTTTAGGTAGTCACATAAAATCACT
TAGGTTTGTATTAAATGAACAGAGAAGTGAAATTATCTACAGGAGAAAAG
TAGGCTCACCAGAGGGGGAGAGGCAAGGAAGACGGTAAAGGAGAATGGGG
CTCAGATATGTATTTAATGATTAGTGTATACAGGGCCATATATACTCCAT
ACACAGTAAGAGCTGGGTTAGGGATTCATGCCAGAAGGTCTCCCTGGCCC
ATTAGAATTGTTCTCTCCCTTTCCCCCAGTCTTTAGCATGTGCGAGCACT
GAGGCGGGTTTTTCTCCTCAGTAGTAGCCTGGGGCTTTCCTCCATAGCCA
GTGGATTCAGGGCTGTATACACTCAGCGCACACATGCTGTACCCTCAGGA
ACTTTTTTCCCTTTCCATTCAATATCTGCAGCTTGTACACAGTTCTTAGG
TCGTGGAAAAGAGATCGTGTGTTCCTTTTTGTTTACTCATTTTTTTTTTC
ACATTAAAATAAAAGAACTAAACTTGGCCTGCATCGGANGATGAAGCANG
AGGAGCAAAATTCTGCCAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_h23.g1 MSMg01no499_h23.g1 CHROMAT_FILE:
MSMg01no499_h23.g1 PHD_FILE: MSMg01no499_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:53 2005
         (513 letters)



>mm_chr1_51736833_51737745
          Length = 913

 Score =  909 bits (470), Expect = 0.0
 Identities = 503/514 (97%), Gaps = 2/514 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcattcaattcgtgtcatttgtaagaaaatgaatggaactggagatcatcatcaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ttcattcaattcgtgtcatttgtaagaaaatgaatggaactggagatcatcattaaacaa 260

                                                                       
Query: 61  gttaagccagtctcagaaagatatatcttgtttaatttttctcaccgatggttcttaggt 120
           ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 261 gttaagccagtctcagaaagatatatcttgtttaacttttctcaccaatggttcttaggt 320

                                                                       
Query: 121 tttaggtagtcacataaaatcacttaggtttgtattaaatgaacagagaagtgaaattat 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagatagtcacataaaatcacttaggtttgtattaaatgaacagagaagtgaaattat 380

                                                                       
Query: 181 ctacaggagaaaagtaggctcaccagagggggagaggcaaggaagacggtaaaggagaat 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ctacaggagaaaagtaggctcaccagagggagagaggcaaggaagacggtaaaggagaat 440

                                                                       
Query: 241 ggggctcagatatgtatttaatgattagtgtatacagggccatatatactccatacacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ggggctcagatatgtatttaatgattagtgtatacagggccatatatactcaatacacag 500

                                                                       
Query: 301 taagagctgggttagggattcatgccagaaggtctccctggcccattagaattgttctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagagctgggttagggattcatgccagaaggtctccctggcccattagaattgttctct 560

                                                                       
Query: 361 ccctttcccccagtctttagcatgtgcgagcactgaggcgggttt-ttctcctcagtagt 419
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 561 ccctttcccccagtctttagcatgtgcgagcactgaggcaggtttcttctcctcagtagt 620

                                                                       
Query: 420 agcctggggctttcctccatagccagtggattcagggctgtatacactcagcgcacacat 479
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 agcctggggctttcctccatagccagtggattcggggctgtatacactcagcgcacacat 680

                                             
Query: 480 gctgtaccctcaggaacttttttccctttccatt 513
           |||||||||||||||||||||  |||||||||||
Sbjct: 681 gctgtaccctcaggaacttttc-ccctttccatt 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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