Query= MSMg01no499_l22.b1 MSMg01no499_l22.b1 CHROMAT_FILE:
MSMg01no499_l22.b1 PHD_FILE: MSMg01no499_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:12 2005
(669 letters)
>mm_chr1_28956900_28957968
Length = 1069
Score = 1243 bits (643), Expect = 0.0
Identities = 661/669 (98%), Gaps = 8/669 (1%)
Strand = Plus / Minus
Query: 6 gaattcaaaaaagc---tttgcataaccaagtgggcttcctgcctttgagtctgaataaa 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gaattcaaaaaagcaaa--tg-ataaccaagtgggcttcctgcctttgagtctgaataaa 836
Query: 63 atcccctgctttgtctcttactggctgcctgaagttgagaaattcacttatggttttcag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 atcccctgctttgtctcttactggctgcctgaagttgagaaattcacttatggttttcag 776
Query: 123 tgttccaatgtcctcattaatttagcagtaggaaaaagaaaacacaaagaatagaaccca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgttccaatgtcctcattaatttagcagtaggaaaaagaaaacacaaagaatagaaccca 716
Query: 183 atttaaagagttgttagaaagagtaatgtaatgtacttcaacagttgttggcaaagtatg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 atttaaagagttgttagaaagagtaatgtaatgtacttcaacagttgttggcaaagtatg 656
Query: 243 tgtttaataagggttggcaattattacagtccttttttccctaagatatatgttgtaggt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgtttaataagggttggcaattattacagtccttttttccctaagatatatgttgtaggt 596
Query: 303 ttaaataataggaaaaggcaaacattttaaagaggcaacaaagaaagtggctgagaagaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttaaataataggaaaaggcaaacattttaaagaggcaacaaagaaagtggctgagaagaa 536
Query: 363 gaataatgaggcattatttgctagtaggattttggcaacataattgtatacttaaacaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gaataatgaggcattatttgctagtaggattttggcaacataattgtatacttaaacaaa 476
Query: 423 ttaaacggaatttttctatatatattcaaat-aaaaaatgatttaaaattagccactgca 481
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 475 ttaaacggaatttttctatatatattcaaataaaaaaatgatttaaaattagccactgca 416
Query: 482 tattcttatttagtg-ttttttttccagtcaatgttgtgaggtactttataatcattccc 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tattcttatttagtgtttttttttccagtcaatgttgtgaggtactttataatcattccc 356
Query: 541 tcatttaatctttaaaataaagtgggatacatagaaaattattccagaagttattccaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcatttaatctttaaaataaagtgggatacatagaaaattattccagaagttattccaga 296
Query: 601 aattggtgtcacagggacctcaacaaagcattccctgaaatctgtctaacagcacccaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aattggtgtcacagggacctcaacaaagcattccctgaaatctgtctaacagcacccaga 236
Query: 661 gcaatctgt 669
|||||||||
Sbjct: 235 gcaatctgt 227
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_l22.g1 MSMg01no499_l22.g1 CHROMAT_FILE:
MSMg01no499_l22.g1 PHD_FILE: MSMg01no499_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:12 2005
(600 letters)
>mm_chr1_28843233_28844232
Length = 1000
Score = 1089 bits (563), Expect = 0.0
Identities = 587/601 (97%), Gaps = 11/601 (1%)
Strand = Plus / Plus
Query: 1 aatgttcacttagttgtcttgtatatagccctgaaagagtcatgcagggtatgcatccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgttcacttagttgtcttgtatatagccctgaaagagtcatgcagggtatgcatccag 260
Query: 61 aagttatgtacatgcctctactttataaatttattttcctgagaaggtgctggatgtttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagttatgtacatgcctctactttataaatttattttcctgagaaggtgctggatgtttt 320
Query: 121 cttctactatgttgataaacacttaaaattatcttcctgtgatgcaggtgatagtataga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 cttctactatgttgataaacacttaaaattatcttcctgtgatgcaggtgatagcataga 380
Query: 181 gtcaatatgctatgtaggtgaacacagtaaagttcaatgctggggtaaaatatgttctag 240
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gtcaatatgctatgtaggagaacacagtaaagttcaatgctggggaaaaatatgttctag 440
Query: 241 ggagatagatatccaaatattaaggtataaatcatattaatctaagagaaaaatgaggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagatagatatccaaatattaaggtataaatcatattaatctaagagaaaaatgaggag 500
Query: 301 aaatgagaacagtggggaaaaagactatacttctagcatccttgttaatgtcttcctttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgagaacagtggggaaaaagactatacttctagcatccttgttaatgtcttcctttg 560
Query: 361 tttctgtgcagtttgttgatctacaccatgtaattgattttagaatccagtaatatttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctgtgcagtttgttgatctacaccatgtaattgattttagaatccagtaatatttcc 620
Query: 421 tccttgctttaaacaagaaaccacggaatagaactttctccaatttgagactgtcagcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccttgctttaaacaagaaaccacggaatagaactttctccaatttgagactgtcagcct 680
Query: 481 gacttttcttcaaatatcatggttattcttcccaactttaggttgttgcaaggctacagg 540
|||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 gacttttcttcaaatatc----------ttcccaactttaggttgttgcaaggctacagg 730
Query: 541 caaccttttttcttttttcttttcaattttttaa-ttaggtatttatttcatttccattt 599
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 731 caaccttttttcttttttcttttcaattttttaaattaggtatttatttcatttccattt 790
Query: 600 c 600
|
Sbjct: 791 c 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
