BAC Information

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BAC

Clone NameMSMg01-500A23
Chromosome1 (Build37)
Map Location 155,395,890 - 155,586,006
singlet/doubletdoublet
Overlap geneNpl, LOC626096, Rgs8
Upstream geneRgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9
Downstream geneRgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500A23.T7 (MSMg01no500_a23.b1)MSMg01-500A23.TJ (MSMg01no500_a23.g1)
ACCAG575991AG575992
length675694
length of high quality
(start - end)		570 (52 - 621)571 (56 - 626)
definitionCHROMAT_FILE: MSMg01no500_a23.b1 PHD_FILE: MSMg01no500_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:38 2005CHROMAT_FILE: MSMg01no500_a23.g1 PHD_FILE: MSMg01no500_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,395,890 - 155,396,459)(155,585,698 - 155,586,006)
sequence
GCTATACGACTACTATAGTTCGAGGATCCGCGGAATTCCAGGATATTCCG
GGCTATACAGAGAAACCCTGTCTCGAAAAACAAACAAACAAAATCATCAA
AACAACAAAACCCAGAGGATTCAGCAGAGCATGGCAACACACATCTTTGA
TCCCAACATTAGATCTGTGAGCAAGGCCAGCCTGGTCTACTTGTAGTTTC
AGGACAGCCAGGGCTACATCATAGAGATACCTAGTCACAGAAAAGAGAAG
AGAAAAGAGGATTTCTTGATCCTCCAAATAGGAAATTGTTTAACTTCAGA
TTTCCTCCTGAACTGTTACTTTTCATTAAAAATCCCAGCGTTATAAGCAG
GATAGAAGCTCATTTCTGTTCAACACTGCAAGCCCCTTGGAGGCAGGAGG
CTCAGAGTCTGCGGCCAGTTTGAGATACAAGATCAACTTGGGAATATTAT
GCTTTGAAATATTTCATATTTGAATTAAGAGCAAATAATCACAGTGCTCT
CGCACCCATGACTTAAAGTGAGCTTGGGATGTTCTTGTTGAAACGCCGGG
GAGAGGGTAGATCCCTGGAGACCTCATCCATGTGAAGGAATGCCAAATTA
CAGACAAAAGTTGGCTTAAATTTAAAACCGCCAAGTTTTAAAAGGGAGGA
GGGGGAAGTGATGTAGTTCCGAACA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTATGCAGTAAGGAAAACAATGTTTTGTCACTTTCAGGATACAGAA
TTCCATCTCCTAGGGGGCTTCTCCAGCAGTAAGGACTGCTCTATGCTCTG
TGAAGTAAAAGGTCGGGAAAGGAAGATGGGAGGGAGTGGGAAGGAGGAAA
GGAAAGGGAGGCGAGGAAGGAGGCTGGAGATGCAGCTCAGTGGTCTTGTC
TAGAGAAAGGGCACTTGAGAATGTGCATGCACAGAGAGAGAAGGAGGAGG
AGGAAGAGGAAGAAGAGGAAGAAGAAGAGATCAAAATGCCTGGATTATAT
AGAGAAGAGGCATTGGGGGAAGGGCAGCCCAGCCCCTGGGCTGAAAGTTC
AGGGTTAGGGGCAGGGTATGCCAGGTGAGACTGAGGGATGCTGGGAGAAC
CTAGAGGCCAGGTCTGCTTTGATATGAAAAATTTGCACCTCAGTCCCTTG
TGCCTGTCCAGTCCAGTCCGAAACCAAACATCTGGAACAATAGTTCAGGT
AGACTCCCCTCACTGAGCCAGACCCTATGAAGGGTGACCCAGTTAGTCAA
CCTGATCCACTGTTCCCAAACTCCCACATTCTCAAGGCAGAACCAAGGCA
GAGAGGACAGGGCACATTCCTGGACACACTTCTACCTCANGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_a23.b1 MSMg01no500_a23.b1 CHROMAT_FILE:
MSMg01no500_a23.b1 PHD_FILE: MSMg01no500_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:38 2005
         (570 letters)



>mm_chr1_155395690_155396659
          Length = 970

 Score = 1094 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctatacagagaaaccctgtctcgaaaaacaaacaaacaaaatcatcaaaacaacaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctatacagagaaaccctgtctcgaaaaacaaacaaacaaaatcatcaaaacaacaaaac 260

                                                                       
Query: 61  ccagaggattcagcagagcatggcaacacacatctttgatcccaacattagatctgtgag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ccagaggattcagcagagcatggcaacacacatctttgatcccaacattagatccgtgag 320

                                                                       
Query: 121 caaggccagcctggtctacttgtagtttcaggacagccagggctacatcatagagatacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggccagcctggtctacttgtagtttcaggacagccagggctacatcatagagatacc 380

                                                                       
Query: 181 tagtcacagaaaagagaagagaaaagaggatttcttgatcctccaaataggaaattgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtcacagaaaagagaagagaaaagaggatttcttgatcctccaaataggaaattgttt 440

                                                                       
Query: 241 aacttcagatttcctcctgaactgttacttttcattaaaaatcccagcgttataagcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacttcagatttcctcctgaactgttacttttcattaaaaatcccagcgttataagcagg 500

                                                                       
Query: 301 atagaagctcatttctgttcaacactgcaagccccttggaggcaggaggctcagagtctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagaagctcatttctgttcaacactgcaagccccttggaggcaggaggctcagagtctg 560

                                                                       
Query: 361 cggccagtttgagatacaagatcaacttgggaatattatgctttgaaatatttcatattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggccagtttgagatacaagatcaacttgggaatattatgctttgaaatatttcatattt 620

                                                                       
Query: 421 gaattaagagcaaataatcacagtgctctcgcacccatgacttaaagtgagcttgggatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaattaagagcaaataatcacagtgctctcgcacccatgacttaaagtgagcttgggatg 680

                                                                       
Query: 481 ttcttgttgaaacgccggggagagggtagatccctggagacctcatccatgtgaaggaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcttgttgaaacgccggggagagggtagatccctggagacctcatccatgtgaaggaat 740

                                         
Query: 541 gccaaattacagacaaaagttggcttaaat 570
           ||||||||||||||||||||||||||||||
Sbjct: 741 gccaaattacagacaaaagttggcttaaat 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no500_a23.g1 MSMg01no500_a23.g1 CHROMAT_FILE:
MSMg01no500_a23.g1 PHD_FILE: MSMg01no500_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:38 2005
         (571 letters)



>mm_chr1_155585698_155586668
          Length = 971

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgcagtaaggaaaacaatgttttgtcactttcaggatacagaattccatctcctaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tatgcagtaaggaaaacaatgttttgtcactttcaggatacagaattccatctcctaggg 250

                                                                       
Query: 61  ggcttctccagcagtaaggactgctctatgctctgtgaagtaaaaggtcgggaaaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggcttctccagcagtaaggactgctctatgctctgtgaagtaaaaggtcgggaaaggaag 190

                                                                       
Query: 121 atgggagggagtgggaaggaggaaaggaaagggaggcgaggaaggaggctggagatgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 atgggagggagtgggaaggaggaaaggaaagggaggcgaggaaggaggctggagatgcag 130

                                                                       
Query: 181 ctcagtggtcttgtctagagaaagggcacttgagaatgtgcatgcacagagagagaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ctcagtggtcttgtctagagaaagggcacttgagaatgtgcatgcacagagagagaagga 70

                                                                       
Query: 241 ggaggaggaagaggaagaagaggaagaagaagagatcaaaatgcctggattatatagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  ggaggaggaagaggaagaagaggaagaagaagagatcaaaatgcctggattatatagaga 10

                    
Query: 301 agaggcatt 309
           |||||||||
Sbjct: 9   agaggcatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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