Query= MSMg01no500_c15.b1 MSMg01no500_c15.b1 CHROMAT_FILE:
MSMg01no500_c15.b1 PHD_FILE: MSMg01no500_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:45 2005
(385 letters)
>mm_chr1_130299274_130300063
Length = 790
Score = 688 bits (356), Expect = 0.0
Identities = 381/394 (96%), Gaps = 10/394 (2%)
Strand = Plus / Plus
Query: 2 acaactaccaaataccaccatgagtcttagttacaagaattgtcattttttttt-acaag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 202 acaactaccaaataccaccatgagtcttagttacaagaattgtcattttttttttacaag 261
Query: 61 gtaacaaaagccatcaatacacctacaattaattactctggcttaatcctttgttatgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtaacaaaagccatcaatacacctacaattaattactctggcttaatcctttgttatgtc 321
Query: 121 agtgccaaaagtatacaattataatgtaagtatgatgtactaaagctattgtataaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agtgccaaaagtatacaattataatgtaagtatgatgtactaaagctattgtataaaatt 381
Query: 181 gacactatcacttgtacataactaaagattttataatttgcgatagcttactttctccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gacactatcacttgtacataactaaagattttataatttgcgatagcttactttctccca 441
Query: 241 cacattgctaactgtataaagcctaatttttaatgcactaaataaatagatacatgcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacattgctaactgtataaagcctaatttttaatgcactaaataaatagatacatgcttt 501
Query: 301 gaaattgttttaggatgtgcctttaattctagaacttgggaag---aagcaagttgtgtc 357
|||||||||||||||||| ||||||||||||| || ||||||| ||||||||||||||
Sbjct: 502 gaaattgttttaggatgtacctttaattctagcacctgggaagcagaagcaagttgtgtc 561
Query: 358 tcaaaaaaccaaccaac------aaaaccaaagg 385
||||||||||||||||| |||||||||||
Sbjct: 562 tcaaaaaaccaaccaaccaaaacaaaaccaaagg 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 790
Length adjustment: 9
Effective length of query: 376
Effective length of database: 781
Effective search space: 293656
Effective search space used: 293656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_c15.g1 MSMg01no500_c15.g1 CHROMAT_FILE:
MSMg01no500_c15.g1 PHD_FILE: MSMg01no500_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:45 2005
(609 letters)
>mm_chr1_130364604_130365616
Length = 1013
Score = 1069 bits (553), Expect = 0.0
Identities = 594/613 (96%), Gaps = 10/613 (1%)
Strand = Plus / Minus
Query: 1 ctggaagcttgaggtagcctgttgtatagcagccacaaataagaaccaaccagtcaagcc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 950 ctggaagcttgaggtagcctgttgtatagcagccacaaataagaagcaaccagtcaagcc 891
Query: 61 gggcagtggtggcacactcctttaatcccagtacttgggaggcagaggcaggcggatttc 120
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 890 gggcagtggtggcgcactcctttaatcccagcacttgggaggcagaggcaggcggatttc 831
Query: 121 tcagttcgaggccagcctggtgtacaaaatgagttccaggacagccagggctacacagag 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tcagttcgaggccagcctagtgtacaaaatgagttccaggacagccagggctacacagag 771
Query: 181 aaatgctgtctcaaaaaaatggggagggagagagagagactccaacaaagtgaaaaacag 240
||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct: 770 aaacgctgtctcaaaaaaacggg------gagagagagactccaacaaggtgaaaaacag 717
Query: 241 agagctaaagctatcttgtgactgcctgtcactgccacacatgcaccatagcaccaatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agagctaaagctatcttgtgactgcctgtcactgccacacatgcaccatagcaccaatgt 657
Query: 301 gctttcttcatctttctctctttctccccaacccataagacttaaaaataaaagcactgt 360
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 656 gctttcttcatctttctgtctttctccccaacccatgagacttaaaaataaaagcactgt 597
Query: 361 ctaaggccacagcaccctgaacactcccaatctcatctaaagaatgaaagccatcaagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctaaggccacagcaccctgaacactcccaatctcatctaaagaatgaaagccatcaagtg 537
Query: 421 aacctgcaagggttaactccacagcacaaagcc----cccagctcaccactcccctaccc 476
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 536 aacctgcaagggttaactccacagcacaaagcccccacccagctcaccactcccctaccc 477
Query: 477 ccaccccaggagttcactgacagaaaatctgaaccaataagtaactattaaattacttta 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ccaccccaggagttcactgacagaaaatctgaaccaataagtaactattaaattacttta 417
Query: 537 cattatgtaaaacagtgccaggtacacagtagaagctaattgagtattcattgattgact 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cattatgtaaaacagtgccaggtacacagtagaagctaattgagtattcattgattgact 357
Query: 597 gactactgcaata 609
|||||||||||||
Sbjct: 356 gactactgcaata 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1013
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1003
Effective search space: 600797
Effective search space used: 600797
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
