Query= MSMg01no500_d15.b1 MSMg01no500_d15.b1 CHROMAT_FILE:
MSMg01no500_d15.b1 PHD_FILE: MSMg01no500_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:50 2005
(417 letters)
>mm_chr1_101998997_101999812
Length = 816
Score = 758 bits (392), Expect = 0.0
Identities = 411/418 (98%), Gaps = 3/418 (0%)
Strand = Plus / Plus
Query: 1 aggacatcctgagttgtgcaggcagatggatagaactagaaaaaaaattcttaaagagct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aggacatcctgagttgtgcaggcagatggatagaactagaaaaaaaattcttaaagagtt 260
Query: 61 atgaaaaagtaaagagctgtgttcgctatctatatagtttccaaccaaagttaggaattc 120
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 atgaaaaagtaaagagctgtgttcgctatctata--gtttccaaccaaagttaggaattc 318
Query: 121 ctttagataaaaactctaaaagagctatgaaaaattctaaaagaagtgttttcactctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctttagataaaaactctaaaagagctatgaaaaattctaaaagaagtgttttcactctcc 378
Query: 181 agagatctccacacagctgatccagataaatactctagcaagaactcttctcttgctaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agagatctccacacagctgatccagataaatactctagcaagaactcttctcttgctaga 438
Query: 241 atcat-tatttaaaataactactggggctggagagtgtgattggtgtttaagagcactgt 299
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aacaaatatttaaaataactactggggctggagagtgtgattggtgtttaagagcactgt 498
Query: 300 ctactcttccagaggtcttgagttcaattcccagcaaccacatgacagatcaaagccact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctactcttccagaggtcttgagttcaattcccagcaaccacatgacagatcaaagccact 558
Query: 360 tgtaatgggatcaaatgccctcttctggtgtgtctcaagagaaagactgagtactcac 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtaatgggattaaatgccctcttctggtgtgtctcaagagaaagactgagtactcac 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 816
Length adjustment: 9
Effective length of query: 408
Effective length of database: 807
Effective search space: 329256
Effective search space used: 329256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_d15.g1 MSMg01no500_d15.g1 CHROMAT_FILE:
MSMg01no500_d15.g1 PHD_FILE: MSMg01no500_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:50 2005
(585 letters)
>mm_chr1_102110889_102111874
Length = 986
Score = 1033 bits (534), Expect = 0.0
Identities = 573/586 (97%), Gaps = 1/586 (0%)
Strand = Plus / Minus
Query: 1 ttctttctatttttcttctatatcttgaacacaatcagcctaggccttcaatccaaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 593 ttctttctatttttcttctatatcttgaacacaatcagcctaggccttcaatctaaaatt 534
Query: 61 ttccaaatgcccaccactgacatgtagtcacgaatacttacaatcaatatttaagttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 533 ttccaaatgcccaccactgacatgtagtcacgaatacttacaatcaatatttaagatttt 474
Query: 121 tagcctctcttctcatggtctgacatattattccttctattgaagaagacagtagggtag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tagcctctcttctcatggtctgacatattattccttctattgaagaagacagtagggtag 414
Query: 181 tatctgatcaggcaaatgtgagcagaaatattactcattcaaattttcagtagaag-ctt 239
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 413 tatctgatcaggcaaatgtgagcagaaatattactcattcatattttcagtagaagcctt 354
Query: 240 tgaaaaaaatacaagcctgtacccttatcatgtatttccttcgtgtatttttcttctctt 299
|||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 353 tgaataaaatacaagcctgtacccttatcatgtatttccttcctgtattttccttctctt 294
Query: 300 ggccatagcaatattcagaagataccgctaccatttattaagataatgagaaagaaggcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggccatagcaatattcagaagataccgctaccatttattaagataatgagaaagaaggcc 234
Query: 360 tgaaaatgtgtgagggactttgtggtatagctatgttgtagtttgaatgtgaattgtctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 233 tgaaaatgtgtgagggactttgtggtatagctatgttgtagtttgaatgtgaactgtctt 174
Query: 420 ccataagttcatgtttgaacatttggtctctggcttgtggtgctgtttggaaaatttcag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ccataagttcatgtttgaacatttggtctctggcttgtggtgctgtttggaaaatttcag 114
Query: 480 aacttttagatggtgtaacctcattggaataaattggtaactggggaaaggactggaagc 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 113 aacttttagatggtgtaacctcattggaataaattggtaactggggacaggactggaagc 54
Query: 540 tatagaggtttatgagatgttctagtatagtctgtttcctgagtgt 585
||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct: 53 tatagagctttattcgattttctagtatagtctgtttcctgagtgt 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 986
Length adjustment: 10
Effective length of query: 575
Effective length of database: 976
Effective search space: 561200
Effective search space used: 561200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
