Query= MSMg01no500_f12.b1 MSMg01no500_f12.b1 CHROMAT_FILE:
MSMg01no500_f12.b1 PHD_FILE: MSMg01no500_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:58 2005
(493 letters)
>mm_chr1_6582344_6583236
Length = 893
Score = 915 bits (473), Expect = 0.0
Identities = 488/493 (98%)
Strand = Plus / Plus
Query: 1 taataaccgtatctatcaggtggtggtggcacaagcctttaatcccaggagaggcaggtg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taataaccatatctatcaggtggtggtggcacaagcctttaatcccaggagaggcaggtg 260
Query: 61 gagtcaacccagccttgtcttcagagtaagttctaggacatccagggctatacaaagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtcaacccagccttgtcttcagagtaagttctaggacatccagggctatacaaagaaa 320
Query: 121 ccttgtcttgaaaacaataacaacagcaacaaaataataagaatatctccatccttaact 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgtcttgaaaacaataacaacagcaacaaaataataagaatatctccatccttaact 380
Query: 181 ttttgaagagtctagatgaattttaatgttggaaaatgttgtaactccttgttattgcta 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 381 ttttgaagagtctagatgaattttcatgttggaaaatgttgtaactccttgttaaagcta 440
Query: 241 atgcttcaagtctggctgggcacacacaacctggctagatgccaaaagatgaaattgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcttcaagtctggctgggcacacacaacctggctagatgccaaaagatgaaattgttt 500
Query: 301 ttacaaatcaatgttgagctccaaagcaaattttcaatattctgttgcctctactatgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacaaatcaatgttgagctccaaagcaaattttcaatattctgttgcctctactatgag 560
Query: 361 ttaataggcatatgaaaaagactttagctctaaggagcccaaccaccttctgtgtaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaataggcatatgaaaaagactttagctctaaggagcccaaccaccttctgtgtaaaat 620
Query: 421 aacctcacaccatgctacttaacactttaaagcagaattaacacagggttaaaggcaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacctcacaccatgctacttaacactttaaagcagaattaacacagggttaaaggcaatg 680
Query: 481 caacgcaactcac 493
|||||||||||||
Sbjct: 681 caacgcaactcac 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_f12.g1 MSMg01no500_f12.g1 CHROMAT_FILE:
MSMg01no500_f12.g1 PHD_FILE: MSMg01no500_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:58 2005
(614 letters)
>mm_chr1_6721853_6722865
Length = 1013
Score = 1141 bits (590), Expect = 0.0
Identities = 608/614 (99%), Gaps = 1/614 (0%)
Strand = Plus / Minus
Query: 1 aatccataaaactcatttcctaggattagcagtccaaagtttcttttaatgtttatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aatccataaaactcatttcctaggattagcagtccaaagtttcttttaatgtttatatac 754
Query: 61 cacttgggattttgaatttcatgatgttaaactttcaacttaactattcttttgcatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 cacttgggattttgaatttcatgatgttaaactttcaacttaactattcttttgcatttc 694
Query: 121 atatcaaacaattatgatcttttggatttcaatagcagacatggaaggtcacataaggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 atatcaaacaattatgatcttttggatttcaatagcagacatggaaggtcacataaggat 634
Query: 181 aagaaataattttaacagcaataaattcctgtgagttgcattttttgatatgtttgtcct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aagaaataattttaacagcaataaattcctgtgagttgcattttttgatatgtttgtcca 574
Query: 241 cttctgctgtatgccacagagactgttctcgttaggcttacatgatgatggcatagaatt 300
| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 573 c-actgctatatgccacagagactgttctcattaggcttacatgatgatggcatagaatt 515
Query: 301 ctatatgtggtagttgtgaattttacttatttccacttaaatagtttaaagatgcaaaca 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 514 ctatatgtggtagttgtgaattttacttatttccacttaagtagtttaaagatgcaaaca 455
Query: 361 agagcactagttgactgcatgaaagtttaagctgtttctgagttttaaatttagttatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agagcactagttgactgcatgaaagtttaagctgtttctgagttttaaatttagttatac 395
Query: 421 atgagattgctacattatctgaaaagaaatgctatatccactaggttggtttctctagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atgagattgctacattatctgaaaagaaatgctatatccactaggttggtttctctagta 335
Query: 481 gcaatataattttaactttcagaaatgggaacaaaccaattacatggattcagagaaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gcaatataattttaactttcagaaatgggaacaaaccaattacatggattcagagaaatg 275
Query: 541 catttctataatgattaacttttcagaagcctaataccttggacagctccaagtacccct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 catttctataatgattaacttttcagaagcctaataccttggacagctccaagtacccct 215
Query: 601 tgcctttccttgtc 614
||||||||||||||
Sbjct: 214 tgcctttccttgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space: 605812
Effective search space used: 605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
