BAC Information

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BAC

Clone NameMSMg01-500J07
Chromosome1 (Build37)
Map Location 110,456,054 - 110,456,638
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb8, LOC435640
Downstream geneEG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500J07.T7 (MSMg01no500_j07.b1)MSMg01-500J07.TJ (MSMg01no500_j07.g1)
ACCAG576387AG576388
length685672
length of high quality
(start - end)
588 (36 - 623)241 (58 - 298)
definitionCHROMAT_FILE: MSMg01no500_j07.b1 PHD_FILE: MSMg01no500_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:14 2005CHROMAT_FILE: MSMg01no500_j07.g1 PHD_FILE: MSMg01no500_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGA
CTTCGCGGTTACCTGACAGGGGAAGTTATTCTTCAAACATGAGCAGCGAG
GTGGAATCACAAAACTGGGGGCAGAGGAACTCTTCTGATCAGGAAACTAA
CTTTATGGTGCTCTCAGGAACTAGTGTGTTTTTACAAACTGACCACAGCT
GTTTGGGAATGCTTTATTGCCCTCCTTTCATGGCCCAAGAGTAGGGCACT
TATCTCTTCAAAGATGTTTGGTCTTTGCTTCTCCCAAGGACAAGAGCCAT
CTTCACTGTTTAGTGCTAGCCATCTATCATGGAGGGTGCCAGCCTTGGCG
ATAGGGGGACTGAGAGATGTTGCTGTTTGTCTATTTCCAAGCTGGCATCC
ACCACCTCCCAGGTGGAGGGGTGTCATTAGGAAGTGCCACCATGAAACAA
GGATAGCAATATTTCAGTGCCAGTTTGGATCCTCTCTGAAAGGCCAGGGA
GGGGAGCTCTGCCTGAGTGGCAAGAAAACACAGAGACAGGCTTCCTGGGT
CTCTTTACTCTTTGTTAACCAGATCAAATGTATGATAATGAGTATGTAGA
TCTCTAAAAAGGAAACATGCATTCATTAATAAGTTGGTCAAAATTGAATC
CCAGATATTTTCCTCTGTCAGTGTCTGTAATTGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTCTGACATTTTGCTGCATATAGTATTGATCAGAGTCTGGCA
TAGCCTCTCAGGGAACAGCTGTACCTGGCTCCTGTCATCAAGCACTTCTT
GGCATCCGTAATACTGGCCTGTTTTGGTGTATGCAGATGGGATTGTTCCT
TAGGTGGAACAGTCTTTCGATGGCTTTACCTCTTGATCTGATTCACTCTT
TGTCTCTGCATTTCATTTTGACAGGAGGAATTCTAGATCAATATCTTTGT
TTTATGTGGGTGGCACCATCTCTCAACTAGGGGCCATGATTATCCAATGG
ATAATGGTCTCCTCAGGTTCTAAATCCTCTTTGTTGGGTATTTCAGCTAA
TGCCCTCCATATTGGGTTCTGGGAATCTCTTGGATTCCATATTATGCCAG
TTAGAATGGCTAACACAAAAATCTCAGGTGACAGCAGATGCTAGGGAGGA
TGTGAAGAATGAGGAACACTCCCCTATTGCTGGTGGGATTGTGAGCTGGT
ACAACCACTCTGGAAATCAGCCAGGTGGTTCCTCAGAACATTGGAAATAA
TACTGCCTGAGGACACAGCTATACCATTCCTGAGAATATATCCAAAAGGT
TCTCGAACATATAACAAGGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_j07.b1 MSMg01no500_j07.b1 CHROMAT_FILE:
MSMg01no500_j07.b1 PHD_FILE: MSMg01no500_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:14 2005
         (588 letters)



>mm_chr1_110455851_110456838
          Length = 988

 Score = 1093 bits (565), Expect = 0.0
 Identities = 580/585 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcagacttcgcggttacctgacaggggaagttattcttcaaacatgagcagcg 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ggaattctcagactttggggttacctgacaggggaagttattcttcaaacatgagcagcg 729

                                                                       
Query: 64  aggtggaatcacaaaactgggggcagaggaactcttctgatcaggaaactaactttatgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aggtggaatcacaaaactgggggcagaggaactcttctgatcaggaaactaactttatgg 669

                                                                       
Query: 124 tgctctcaggaactagtgtgtttttacaaactgaccacagctgtttgggaatgctttatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgctctcaggaactagtgtgtttttacaaactgaccacagctgtttgggaatgctttatt 609

                                                                       
Query: 184 gccctcctttcatggcccaagagtagggcacttatctcttcaaagatgtttggtctttgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gccctcctttcatggcccaagagtagggcacttatctcttcaaagatgtttggtctttgc 549

                                                                       
Query: 244 ttctcccaaggacaagagccatcttcactgtttagtgctagccatctatcatggagggtg 303
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 548 ttctcccaaggacaagagccatcttcactgggaagtgctagccatctatcatggagggtg 489

                                                                       
Query: 304 ccagccttggcgatagggggactgagagatgttgctgtttgtctatttccaagctggcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccagccttggcgatagggggactgagagatgttgctgtttgtctatttccaagctggcat 429

                                                                       
Query: 364 ccaccacctcccaggtggaggggtgtcattaggaagtgccaccatgaaacaaggatagca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ccaccacctcccaggtggaggggtgtcattaggaagtgccaccatgaaacaaggatagca 369

                                                                       
Query: 424 atatttcagtgccagtttggatcctctctgaaaggccagggaggggagctctgcctgagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atatttcagtgccagtttggatcctctctgaaaggccagggaggggagctctgcctgagt 309

                                                                       
Query: 484 ggcaagaaaacacagagacaggcttcctgggtctctttactctttgttaaccagatcaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggcaagaaaacacagagacaggcttcctgggtctctttactctttgttaaccagatcaaa 249

                                                        
Query: 544 tgtatgataatgagtatgtagatctctaaaaaggaaacatgcatt 588
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgtatgataatgagtatgtagatctctaaaaaggaaacatgcatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)