Query= MSMg01no500_n02.b1 MSMg01no500_n02.b1 CHROMAT_FILE:
MSMg01no500_n02.b1 PHD_FILE: MSMg01no500_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:31 2005
(605 letters)
>mm_chr1_186173988_186174989
Length = 1002
Score = 1050 bits (543), Expect = 0.0
Identities = 562/569 (98%), Gaps = 3/569 (0%)
Strand = Plus / Plus
Query: 1 cccaggttactttaaatttgtttgcatggacttaataattctcatgaagtaaaaactttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccaggttactttaaatttgtttgcatggacttaataattctcatgaagtaaaaactttc 260
Query: 61 aacaaatgaagttctaagactatttcgaatatttctttccctagttgacttatggctcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaatgaagttctaagactatttcgaatatttctttccctagttgacttatggctcga 320
Query: 121 tgtgggatatttagacaactctacaggataggtaatcatatcattgtgatacttaaaaaa 180
|||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||
Sbjct: 321 tgtgggatatttagacaactctacagaataggtaatcatatcactgtgatac-taaaaac 379
Query: 181 aaacaacaacactaagaaatggaaacagactccccttccttcagaatgcgaggctctgaa 240
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 380 aa--aacaacactaagaaatggaaacagactccccttccttcagaatgcgaagctctgaa 437
Query: 241 gacctgagtttctccaagatttccacaaggaacctgaagctttggattggcagtgctcgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gacctgagtttctccaagatttccacaaggaacctgaagctttggattggcagtgctcgc 497
Query: 301 acctgaggtgaccttcagcaacactcactgtgtgatcaagaaaaaagagcctcccttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acctgaggtgaccttcagcaacactcactgtgtgatcaagaaaaaagagcctcccttaaa 557
Query: 361 gcttgctctgacagctacctccaccccgacctccttcctgcagtccactagttaacagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcttgctctgacagctacctccaccccgacctccttcctgcagtccactagttaacagct 617
Query: 421 tcctctgaggcttcccctgggaatctgccacctctcataggtgacttggaacaaacaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcctctgaggcttcccctgggaatctgccacctctcataggtgacttggaacaaacaact 677
Query: 481 catagaagtcgatcctctccaggtgtccttgatggtctccatcatgaggtcccctctaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 catagaagtcgatcctctccaggtgtccttgatggtctccatcatgaggtcccctctaga 737
Query: 541 ccttgctaggtccttaattggttctttag 569
|||||||||||||||||||||||||||||
Sbjct: 738 ccttgctaggtccttaattggttctttag 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1002
Length adjustment: 10
Effective length of query: 595
Effective length of database: 992
Effective search space: 590240
Effective search space used: 590240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_n02.g1 MSMg01no500_n02.g1 CHROMAT_FILE:
MSMg01no500_n02.g1 PHD_FILE: MSMg01no500_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:31 2005
(597 letters)
>mm_chr1_186359211_186360203
Length = 993
Score = 1025 bits (530), Expect = 0.0
Identities = 582/604 (96%), Gaps = 11/604 (1%)
Strand = Plus / Minus
Query: 1 aacagaatattttccaaagcctaccttaaccactcatggagtcagcttgtacttcaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aacagaatattttccaaagcctaccttaaccactcatggagtcagcttgtacttcaagga 807
Query: 61 gtgtct-------ggggcggtccctgcttcacagagtacatagtcagacatgtactcagt 113
|||||| ||||||||||||||||||||||||| |||||||||||| || |||
Sbjct: 806 gtgtctggggtaaggggcggtccctgcttcacagagtatatagtcagacat-ta--aagt 750
Query: 114 atgtgagtgtctaattcaacccaacaaatgtcagaaaccctgaaagatgtagtaagcaga 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 atgtgagtgtctaattcaacccaacaaatgtcagaaaccctgaaagatgtagtaagcaga 690
Query: 174 atattgttgagctgtgcgatggctggaatggctggactgggggtggggcggagctaaggt 233
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 atattgttgagctgtgcaatggctggaatggctggactgggggtggggcggagctaaggt 630
Query: 234 gaaaagcattgtgggagattagcactagactagcaaagggaagaattagtgggtattcag 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaaaagcattgtgggagattagcactagactagcaaagggaagaattagtgggtattcag 570
Query: 294 aagattgaacagtgcgctttagttggtgaggctcacataagaagttaaggaggaaggaac 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagattgaacagtgcgctttagttggtgaggctcacataagaagttaaggaggaaggaac 510
Query: 354 aacgtgttgtgggaaggcaagggaaatgaaaccatagaataagcagtccagctaaaatcc 413
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aacatgttgtgggaaggcaagggaaatgaaaccatagaataagcagtccagctaaaatcc 450
Query: 414 cctcacgggggattggcaatgtctcagcttcacccaagagttttacatcggacctgaaag 473
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 449 cctcacgggggattggcaatgtctcagcttcacccaagagttttacatcagacctgaaag 390
Query: 474 tgtgaagcagaatcagtggctgagtcagtgggcactggttagatattggtagacagaggt 533
||||||||||||||||||||||||||||||| ||||||||| || |||||||||| ||||
Sbjct: 389 tgtgaagcagaatcagtggctgagtcagtggacactggttacatgttggtagacaaaggt 330
Query: 534 gggtagaaactggtcctgcattgaagatgcttgggccaatccgagataagcagaggggtc 593
||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 329 gggtagaaactggtc-tgcattgaagatgcttgggccagtccgagataagcagagtggtc 271
Query: 594 attt 597
||||
Sbjct: 270 attt 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 993
Length adjustment: 10
Effective length of query: 587
Effective length of database: 983
Effective search space: 577021
Effective search space used: 577021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
