BAC Information

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BAC

Clone NameMSMg01-500P01
Chromosome1 (Build37)
Map Location 17,353,597 - 17,353,920
singlet/doubletsinglet
Overlap genenone
Upstream geneStau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1
Downstream geneLOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500P01.T7 (MSMg01no500_p01.b1)MSMg01-500P01.TJ (MSMg01no500_p01.g1)
ACCAG576657AG576658
length672683
length of high quality
(start - end)
528 (60 - 587)325 (304 - 628)
definitionCHROMAT_FILE: MSMg01no500_p01.b1 PHD_FILE: MSMg01no500_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:40 2005CHROMAT_FILE: MSMg01no500_p01.g1 PHD_FILE: MSMg01no500_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTATACGACTCACTATAGTCATGATTGGGCGGAATTCTTTGTTTTGGCT
TAAACCCCATTTTCTAATAGGGTTATTTGATTTTCTGGAGTCCAGCTTCT
TGAGTTCTTTATATGTATTGGACATTAGTTCCCTATCAGATTTAGGATTG
GTAACGATCCTTTCCCAATCTGTTGGTGGCCCTTTTGTCTTATTGACAGT
GTCTTTTGTCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTTGA
TTCTCGATCTTACAACACAAGTTATTGCTGTTCTGTCCAGGAATTTTTCT
CCTGTGCCCATATCTTTGATGCTTTTCCCCACTTTCTCCTCTATACGTTT
CAGTGTATCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGACTTGAGCT
TTGCACAAGGAGATAAGAATGGATCAATTCGCATTCTTCTACATGATAAC
CACCAGTTGAGCCAGCAACATTTGCTGAAAATGCTGGGTTTTTTTCCACT
GGATGGTTTATCTCCTTTGTCAAAGAGCAAGTGACCATAGGTGTGTGGGT
TCATTTCTGGGTCTTCAATTCTATCCCATTGATCTACTTGTCTGTCGCAC
CAGTACCATGAAGTTTTTATCACTTTTGCTCCGTAGCACAGCTCGAGGTC
ATGCATGGTGATTCCCCCATAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCCA
AAATTCTCTTAGNAAAAAATAGCCATAAAAAGTTAAAAAAAAATGTCTTT
CAGAAGAGAGACTTCTTCTCACTTCTGGGAAGATAAAAATCACATGAAAA
GGAGGCCTCTGGACCCCTGGGCAGAAAGCTAGGAAAACTGCATTCTTTTG
AACAGTCCTATTTCATGCCTGACATCTTAGTGTATTGATTTTGTCATCCA
TTTCTTTCTTAACTGCTCCTGGCTGGAAAAAAATAAAGTAGATGAACTTT
TTCAATGATTCATGTCATAGGCTTCTCATAACAGAGGGTGAGTGTTTTGT
GATTGCTTTTGTGTGTGTGTGTGTGTCCCCTAGATATTTTTCTCTATTGG
TTAACCGAACCATGGTAATCGTCATATAAAGAATATTGAACAAAGAGGAG
TAAATGAGAAGTTCTGCTTACATTTGCTAGGCTAACAGAATTAGAAAGGT
AATATATCTAATCACAGGTGAAAGACAGTTCTTTTTACTCATCTCAGAAG
CACAGGTGTCAAGCATCATCTGTGTTGGATTCGACTTTCCATTTCATTTG
GCTTTCTGGTTATTGTACTTTTTCAAATGTTACTTAGAGCACTACCAAAA
CAAGCCAGCTTGTGACTAATTGATCATATATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_p01.g1 MSMg01no500_p01.g1 CHROMAT_FILE:
MSMg01no500_p01.g1 PHD_FILE: MSMg01no500_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:40 2005
         (325 letters)



>mm_chr1_17353397_17354120
          Length = 724

 Score =  598 bits (309), Expect = e-175
 Identities = 321/325 (98%), Gaps = 1/325 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgattcatgtcataggcttctcataacagagggtgagtgttttgtgattgcttttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgattcatgtcataggcttctcataacagagggtgagtgttttgtgattgcttttgtg 260

                                                                       
Query: 61  tgtgtgtgtgtgtcccctagatatttttctctattggttaaccgaaccatggtaatcgtc 120
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 261 tgtgtgtgtgtgtcccctagatatttttctctattggttaagtgaaccatggtaatcgtc 320

                                                                       
Query: 121 atataaagaatattgaacaaagaggagtaaatgagaagttctgcttacatttgctaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atataaagaatattgaacaaagaggagtaaatgagaagttctgcttacatttgctaggct 380

                                                                       
Query: 181 aacagaattagaaaggtaatatatctaatcacaggtgaaagacagttctttttactcatc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagaattagaaaggtaatatacctaatcacaggtgaaagacagttctttttactcatc 440

                                                                       
Query: 241 tcagaagcacaggtgtcaagcatcatctgtgttggattcgactttccatttcatttggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagaagcacaggtgtcaagcatcatctgtgttggattcgactttccatttcatttggct 500

                                    
Query: 301 ttctggttattgtactttttcaaat 325
           ||||||| |||||||||||||||||
Sbjct: 501 ttctggt-attgtactttttcaaat 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 724
Length adjustment: 9
Effective length of query: 316
Effective length of database: 715
Effective search space:   225940
Effective search space used:   225940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)