Query= MSMg01no501_e13.b1 MSMg01no501_e13.b1 CHROMAT_FILE:
MSMg01no501_e13.b1 PHD_FILE: MSMg01no501_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:05 2005
(602 letters)
>mm_chr1_172259158_172260159
Length = 1002
Score = 1135 bits (587), Expect = 0.0
Identities = 599/603 (99%), Gaps = 2/603 (0%)
Strand = Plus / Plus
Query: 1 ggagtgggacctccacggcgtcaatgtctgtctcctctgcagcggctgtggagaccctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagtgggacctccacggcgtcaatgtctgtctcctctgcagcggctgtggagaccctct 260
Query: 61 cagctcccgtgagctgccggcctgtggggataacagggaagggaaccacaacatatggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctcccgtgagctgccggcctgtggggataacagggaagggaaccacaacatatggaa 320
Query: 121 caaccgtacctctttaatgtgttagttctcagtcactcaagctcaggcatgccatgggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaccgtacctctttaatgtgttagttctcagtcactcaagctcaggcatgccatgggct 380
Query: 181 gacatgtcacacacccttccgttcgaggtacacgaatacaccttttcaacccagtgtgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatgtcacacacccttccgttcgaggtacacgaatacaccttttcaacccagtgtgct 440
Query: 241 atgtcttctt-attatcatcctaaagtccagaaacaaatgaacattcctcaagctggatg 299
|||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtct-cttcagtatcatcctaaagtccagaaacaaatgaacattcctcaagctggatg 499
Query: 300 cctggtacatttctctcagcaagatgtaaagattctagaagaaaagggttgctatctcta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctggtacatttctctcagcaagatgtaaagattctagaagaaaagggttgctatctcta 559
Query: 360 ctgcatcccagctcaggcctcagcttccacggtccacagagactatctccttaccctata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgcatcccagctcaggcctcagcttccacggtccacagagactatctccttaccctata 619
Query: 420 tttgggatttcgtttgccaccatattttcctgttttgagatgggggcttcactctgcagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttgggatttcgtttgccaccatattttcctgttttgagatgggggcttcactctgcagc 679
Query: 480 ccaagatatcccagaacacactcgctagccaaggctagcctccaacctatgcccttcttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccaagatatcccagaacacactcgctagccaaggctagcctccaacctatgcccttcttc 739
Query: 540 ctttttctgcctcctgagtactgggattacaggcatgggccctctatgttcatcactgtt 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 740 ctttttctgcctcctgagtactgggattacaggcatgggccctctaggttcatcactgtt 799
Query: 600 gcc 602
|||
Sbjct: 800 gcc 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_e13.g1 MSMg01no501_e13.g1 CHROMAT_FILE:
MSMg01no501_e13.g1 PHD_FILE: MSMg01no501_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:06 2005
(619 letters)
>mm_chr1_172437429_172438447
Length = 1019
Score = 1197 bits (619), Expect = 0.0
Identities = 619/619 (100%)
Strand = Plus / Minus
Query: 1 tcttaaggcaaattggtctgtgcatcctttgcagaagtaggagctaggaattaagacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tcttaaggcaaattggtctgtgcatcctttgcagaagtaggagctaggaattaagacttc 760
Query: 61 tgtagagtctagacagaaggaagtaacccggagtggagctagcacctgcgtggtatgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tgtagagtctagacagaaggaagtaacccggagtggagctagcacctgcgtggtatgcag 700
Query: 121 gctgcatggaggactggcaacagacatgctcctggcatctccatttgggttgcttgcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gctgcatggaggactggcaacagacatgctcctggcatctccatttgggttgcttgcaga 640
Query: 181 aagagtttggctttgctgcttttagtatcttttctgacttgttggtacctgtgctgggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aagagtttggctttgctgcttttagtatcttttctgacttgttggtacctgtgctgggta 580
Query: 241 caaaatatgaggccagtgatgggccataggaatgacagtacaaagacccagctaggactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 caaaatatgaggccagtgatgggccataggaatgacagtacaaagacccagctaggactt 520
Query: 301 agctatcaaccattgacaatacagagccaccttcacacactgcaccccagcactgactgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agctatcaaccattgacaatacagagccaccttcacacactgcaccccagcactgactgt 460
Query: 361 ggtcctggtggtggacgttctgagtatcactactgattctgcttgggctgggcaccggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggtcctggtggtggacgttctgagtatcactactgattctgcttgggctgggcaccggag 400
Query: 421 agctcggataacatatccactgtgtattcacagagaggtgatttcagtgtgaagtctgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agctcggataacatatccactgtgtattcacagagaggtgatttcagtgtgaagtctgac 340
Query: 481 ttgtttgaatttattggttatataatataacttgtgtttaaattataaatctatataagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttgtttgaatttattggttatataatataacttgtgtttaaattataaatctatataagg 280
Query: 541 cctgtatgcataagcagtttatatctagatgtatgttttacatatttaaatgatattata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cctgtatgcataagcagtttatatctagatgtatgttttacatatttaaatgatattata 220
Query: 601 atttgccaatacttttttg 619
|||||||||||||||||||
Sbjct: 219 atttgccaatacttttttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
