Query= MSMg01no501_k07.b1 MSMg01no501_k07.b1 CHROMAT_FILE:
MSMg01no501_k07.b1 PHD_FILE: MSMg01no501_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:30 2005
(307 letters)
>mm_chr1_10692681_10693387
Length = 707
Score = 578 bits (299), Expect = e-169
Identities = 305/307 (99%)
Strand = Plus / Plus
Query: 1 ttaggagtcctgatatataaacacagaggctttgtaatcaatctctaaatgatttctttg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttaggagtcctgatatataaacacagaggctttttaatcaatctctaaatgatttctttg 260
Query: 61 tagttttcaagttgtggttgatgaattagaaatagaataaaatagccactggtcatatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagttttcaagttgtggttgatgaattagaaatagaataaaatagccactggtcatatgc 320
Query: 121 aaaaccaagccagagtgagaaagtggtaactaagatgcaaattaagacgagaccctttct 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 aaaaccaagccagagtgagaaagtggtaactaagatggaaattaagacgagaccctttct 380
Query: 181 tagaccatggaatagcaagcttctgtccatccatatcccacagaagtggggaacaaattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaccatggaatagcaagcttctgtccatccatatcccacagaagtggggaacaaattg 440
Query: 241 atcctcaagccactctgtggaaatcaaaagacatttgatctgtgctgtgttctaatgacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctcaagccactctgtggaaatcaaaagacatttgatctgtgctgtgttctaatgacc 500
Query: 301 actatca 307
|||||||
Sbjct: 501 actatca 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_k07.g1 MSMg01no501_k07.g1 CHROMAT_FILE:
MSMg01no501_k07.g1 PHD_FILE: MSMg01no501_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:30 2005
(571 letters)
>mm_chr1_10825955_10826925
Length = 971
Score = 984 bits (509), Expect = 0.0
Identities = 541/559 (96%), Gaps = 12/559 (2%)
Strand = Plus / Minus
Query: 25 tattagtagtttagggcaagcagtctggagcaaaccttaaagtcaggctctccagctcct 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 tattagtagtttagggcaagcagtctggagcaaaccttaaagtcaggctctccagctcct 912
Query: 85 tgaaatcatagacaagagacttgacttttgtgtgtgctgatatactcatttttaaacagg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 tgaaatcatagacaagagacttgacttttgtgtgtgctgatatactcatttttaaacagg 852
Query: 145 ttgctgctgctgcatgccagcat------------cacacacacacacacacacacacac 192
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 851 ttgctgctgctgcatgccagcatcacacacacacacacacacacacacacacacacacac 792
Query: 193 acacacacacacacacacacgatgtaatgtatgtctagttcagagagctgcatgtgttta 252
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 791 acacacacacacacacacacgatgtaatgtatgtctagttcagagagctgcatgtgttca 732
Query: 253 ctgctgttatgtgagatgcaccttagcctctctgagttctcatgttccggggagagccta 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ctgctgttatgtgagatgcaccttagcctctctgagttctcatgttccggggagagccta 672
Query: 313 aatatcatcattcctaattctgaactgaaatttcatgctcacgtttgacctctgacttgt 372
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 671 aatatcatcattcctaattctgaactgaaatttcatgctcacatttgacctctgacttgt 612
Query: 373 agagtgtgtactctctaacagcactggctgaattaatggatggaagaaaggaattatggg 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agagtgtgtactctctaacagcactggctgaattaatggatggaagaaaggaattatggg 552
Query: 433 tgaagaatcgagtgttatactgtttttaacagaatgatgtattttcacaatgaaatgaac 492
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 551 tgaaaaatcgagtgttatactgtttttaacagaatgatgtattcccacaatgaaatgaac 492
Query: 493 agactgaattttaagctctgtgaccctggtgtgtcatttacactcagaaatcaaatcaat 552
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaactgaattttaagctctgtgaccctggtgtgtcatttacactcagaaatcaaatcaat 432
Query: 553 ccatttcactgggggcaga 571
|||||||||||||||||||
Sbjct: 431 ccatttcactgggggcaga 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
