Query= MSMg01no502_c14.b1 MSMg01no502_c14.b1 CHROMAT_FILE:
MSMg01no502_c14.b1 PHD_FILE: MSMg01no502_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:07 2005
(576 letters)
>mm_chr1_179714217_179715192
Length = 976
Score = 928 bits (480), Expect = 0.0
Identities = 550/584 (94%), Gaps = 20/584 (3%)
Strand = Plus / Plus
Query: 1 aaagtttattttatatatatataaa-a-------atatgtgtgtgtgtgtgagagagaga 52
||||||||||||||||||||||| | | ||||||||||||||||| | ||||||
Sbjct: 205 aaagtttattttatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgagaga 264
Query: 53 gagagagagagagagagagagagagagagagagagaaagagagagataagggatataaaa 112
||||||||||||||||||| |||| || ||| ||||||||||||||||||
Sbjct: 265 gagagagagagagagagagtgagaaag-------gaa-----gagataagggatataaaa 312
Query: 113 cactaaaattatgttcaaaactacttggaatttctttgtaacaaatcaatcatgttctga 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cactaaaattatgttcaaaactacttggaatttctttgtaacaaatcaatcatgttctga 372
Query: 173 aagaagcttagggcacagccggatcaccacctataccaatgtctttcagaaccacactct 232
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aagaagctaagggcacagccggatcaccacctataccaatgtctttcagaaccacactct 432
Query: 233 actagtgatcacaatttttttttagtgtgacatgaacatttttaaacaacagaatataaa 292
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 actagtgatcacaaaattaatttagtgtgacatgaacatttttaaacaacagaatataaa 492
Query: 293 tcatcagactgtaagggtttagaatgaaatatttcttataaagagtcaaagttgaaagtc 352
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 493 tcatcagactgtaagggtttagaatgaaatatttcttatagagagtcaaagttgaaagtc 552
Query: 353 tttggaaaacttattgatgacaagaacttctgtatggaataaggctatgacgcacatagg 412
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 553 tttggaaaacttattgatgacaagaacttctgtatggaataaggctatgatgcacatagg 612
Query: 413 tgcctgcaaagtaaacaccctgggaaccacctctgcaagacccgagagtgagaagctgct 472
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 613 tgcctgcaaagtaaacaccctgggaaccacctctgcaagacccgcgagtgagaagctgct 672
Query: 473 tggcaggtctgtcctatacggtatcacagccaaaagtcgtgaggcatcaaggaaccatct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tggcaggtctgtcctatacggtatcacagccaaaagtcgtgaggcatcaaggaaccatct 732
Query: 533 ggtcagtgaaacgtaaagtcagttttgataatgaaaaactacca 576
||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 733 ggtcagtgaaatgtaaagtcagttttgataatgaaaaactacca 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_c14.g1 MSMg01no502_c14.g1 CHROMAT_FILE:
MSMg01no502_c14.g1 PHD_FILE: MSMg01no502_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:07 2005
(651 letters)
>mm_chr1_179906197_179907248
Length = 1052
Score = 1237 bits (640), Expect = 0.0
Identities = 649/652 (99%), Gaps = 1/652 (0%)
Strand = Plus / Minus
Query: 1 actgacaaactcagttgaatttgaagccagtattgaagaataacatccagtttcactagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 actgacaaactcagttgaatttgaagccagtattgaagaataacatccagtttcactagt 601
Query: 61 agatcttgagactgtccattttccatttcaaaagtgccagccactcaaagagatagcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agatcttgagactgtccattttccatttcaaaagtgccagccactcaaagagatagcaca 541
Query: 121 gcttgaaatgccaagggatcccttttaatctgcatgtctttagttgtggagtgacttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gcttgaaatgccaagggatcccttttaatctgcatgtctttagttgtggagtgacttttg 481
Query: 181 tcagtgatgaccaccagcttgtatcttcccagatggaaaggaaagtgtttggtaaagtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tcagtgatgaccaccagcttgtatcttcccagatggaaaggaaagtgtttggtaaagtct 421
Query: 241 ttgaaaatagctgctcatgttaccactactgtctgtgtttgatggcagtgatggctataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttgaaaatagctgctcatgttaccactactgtctgtgtttgatggcagtgatggctataa 361
Query: 301 tcaactcccctaggctagtgggggttttgttgtttttagaagcagattttttctttgtag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcaactcccctaggctagtgggggttttgttgtttttagaagcagattttttctttgtag 301
Query: 361 tctagtctttgtttgaattccccatccacttgtgctgcccggctcctcagaagagggatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tctagtctttgtttgaattccccatccacttgtgctgcccggctcctcagaagagggatt 241
Query: 421 aaaccttttaaag-aaaaaaaagtcctgtatttattttcctttatttttaattttctgtg 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaaccttttaaagaaaaaaaaagtcctgtatttattttcctttatttttaattttctgtg 181
Query: 480 tatgggaatgctagctgcaggtacatctgctatcacatgcatgcagtactgttagaggcc 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tatgggagtgctagctgcaggtacatctgctatcacatgcatgcagtactgttagaggcc 121
Query: 540 agaagagagcgttggattccccagaactggagttaccatgaataatcatgtgagcaatgg 599
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 120 agaagagagcgttggattccccagaactagagttaccatgaataatcatgtgagcaatgg 61
Query: 600 gaatcaaattattctttttttttttcttttgatttttcaagataaagtttta 651
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gaatcaaattattctttttttttttcttttgatttttcaagataaagtttta 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1052
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1042
Effective search space: 667922
Effective search space used: 667922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
