BAC Information

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BAC

Clone NameMSMg01-502G10
Chromosome1 (Build37)
Map Location 180,451,436 - 180,452,018
singlet/doubletsinglet
Overlap genenone
Upstream geneEG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
Downstream geneD230039L06Rik, Kif26b, Smyd3, LOC666354, LOC433941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502G10.T7 (MSMg01no502_g10.b1)MSMg01-502G10.TJ (MSMg01no502_g10.g1)
ACCAG577764AG577765
length736809
length of high quality
(start - end)
567 (58 - 624)174 (72 - 245)
definitionCHROMAT_FILE: MSMg01no502_g10.b1 PHD_FILE: MSMg01no502_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:25 2005CHROMAT_FILE: MSMg01no502_g10.g1 PHD_FILE: MSMg01no502_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTGCCTTTTTCA
CACTGCCAGCTCAAAGAGACAACGTTTCCTCAGCAGAGACTCTCACTTAC
TCAAAACCCCTGTGAGTTTTTCATTGCCTCAGGTTAAAAATTCCCAAGTT
GACAAATTTAAATACAGGGAGCATCTTGCCCTTATGTACTCCCATTGGCC
TGTGGCTCAGCTGGGTCTCCCTTTCATTTCCTTCTGGGTGTTGGCTTCTT
GTCTGAAGTCTTCCCTTTGCATTTCTCAATCCTGGAGTTTAAAAGCCCCA
TTTTTTAGCCACCACCCCCATCAGTTTTTGGTGACCCCTCCACTGGGAAT
GCCACTTCCTCTGATGTCCTACATCTTATTTATATAAGAATGTTTCCAGG
TTTGTCCTAGAGGAGGGTGTTCGGGTCTGTTAGCCACATAGTGAGTTGGT
TTTATTTGTATCTTGAACTTCTGCAGCTTTTCTGTTTCTTTACTTTCCCT
TCCTCCCTCCTTCCCTCCCTCCCTCCCTGTCTCCATCTCTGCCTCTCTCC
CTGCTTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCTCCCTTCTGCATCAT
TTCAACATGGCCTCAAGCTCACCATGTAGTCTAGGATAACCCCAAACACC
GTCACCTTCCAAGTGCAGACATCACAAGCATGCCTCCCCCCCCCCCCAAC
ATCCTATCCAAGCTGACTTAAAGGCTTCTTGGTTCC
CGATGCAGTGGGAGGCCTGGCGGCCGCCTGTTTCCTACGTTGAGGTGACC
TATAGAAGTACTGAAGAAATCATAACCATTCATGAAAAGGATACAATGTA
AGAACTAGAGAAAATTATTTTAACATCATAAAATCCACAGATGAAAATAT
ATGTCCTTAGAGGTATGCCAGGGCAGGAAGGCAGGAGTGGGTGGGTGGGT
GGGTAGAGGAGCACCCTCATAGAGGCAGGGGGAGGAGGGATGTTTTTTTG
GGNNNCNNGNCGCGGNCGNCGGNCNCGCGGCCGGCCGCCGGGGGGCGCGG
CGCCGGAGATTGGGGTGGGTAGCGGAACGCGAGCAGCGGGAGACGAGGAG
ACTTTTTTTTTCCCCCCCCCACATTCGATGGGGTACGTCTACGTGTAATG
TTGCGTTCAGCCCTCTCCCATTTATTTTTATTTGTGCTTATCGGCAGATC
CTTGCCATTGAAGCTTCATTCACAGCCTTCGGCTATATTATGGTAAAAAT
AATCAATCTCCCTTCCTTTTTCCCCCTTTTTGCTCCCCACTTATTTCCTG
TATTCTCACTCCATGGCTGTTTTTTCCTTCCCCGCCATTCCCGCTCTTTT
CCTTTCCTCACCTTCCCTGCAATGTCTAATATACTTTCCCTTCACCCACT
ATTCCCCGTTACACCCGCCCCTTTTCTTTTTTTTTTTTTCTCCAGCACAC
CTTCCTTTTACCGCAATTTCACCCTTCTCTTCCTCTGTTTTGTTTTTCCA
AAGCTTCTCTTTGGGCGTGCTTTTTTCCCGGTCGGGTTTCACGTGTCGCC
GGATCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_g10.b1 MSMg01no502_g10.b1 CHROMAT_FILE:
MSMg01no502_g10.b1 PHD_FILE: MSMg01no502_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:25 2005
         (567 letters)



>mm_chr1_180451236_180452202
          Length = 967

 Score =  880 bits (455), Expect = 0.0
 Identities = 544/583 (93%), Gaps = 16/583 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctcaaagagacaacgtttcctcagcagagactctcacttactcaaaacccctgtgagt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agctcaaagagacaacgtgtcctcagcagagactctcacttactcaaaacctctgtgagt 260

                                                                       
Query: 61  ttttcattgcctcaggttaaaaattcccaagttgacaaatttaaatacagggagcatctt 120
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ttttcattgcctcaagttaaaaattcccaacttgacaaatttaaatacagggagcatctt 320

                                                                       
Query: 121 gcccttatgtactcccattggcctgtggctcagctgggtctccctttcatttccttctgg 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccttatgtattcccattggcctgtggctcagctgggtctccctttcatttccttctgg 380

                                                                       
Query: 181 gtgttggcttcttgtctgaagtcttccctttgcatttctcaatcctggagtttaaaagcc 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgttggcttcttgtctaaagtcttccctttgcatttctcaatcctggagtttaaaagcc 440

                                                                       
Query: 241 ccattttttagccaccacccccatcagtttttggtgacccctccactgggaatgccactt 300
           |||  |   |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ccagctcaaagccaccacccccatcagtttttggtgatccctccactgggaatgccactt 500

                                                                       
Query: 301 cctctgatgtcctacatcttatttatataagaatgtttccaggtttgtcctagaggaggg 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctctgatgtcctacgtcttatttatataagaatgtttccaggtttgtcctagaggaggg 560

                                                                       
Query: 361 tgttcgggtctgttagccacatagtgagttggttttatttgtatcttgaacttctgcagc 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttccggtctgttagccacatagtgagttggttttatttgtatcttgaacttctgcagc 620

                                                                       
Query: 421 ttttctgtttctttactttcccttcctccctccttccctccctccctccctgtctccatc 480
           ||||||||||||||||||||||| ||||||||| |||||||||||||||||  |||| ||
Sbjct: 621 ttttctgtttctttactttccctccctccctccctccctccctccctccctccctccctc 680

                                                                       
Query: 481 tctgcctc--tc--------------tccctgcttccttccctccctccctccttccctc 524
            || ||||  ||              ||||| ||||||||||||||||||||||||||||
Sbjct: 681 cctccctccctccctccctccctccctccctccttccttccctccctccctccttccctc 740

                                                      
Query: 525 cctctcccttctgcatcatttcaacatggcctcaagctcacca 567
           |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 cctctcccttctgcttcatttcaacatggcctcaagctcacca 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)