Query= MSMg01no502_l07.b1 MSMg01no502_l07.b1 CHROMAT_FILE:
MSMg01no502_l07.b1 PHD_FILE: MSMg01no502_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:49 2005
(558 letters)
>mm_chr1_150645618_150646576
Length = 959
Score = 1027 bits (531), Expect = 0.0
Identities = 554/566 (97%), Gaps = 8/566 (1%)
Strand = Plus / Plus
Query: 1 tgaatctgcatctatcatagcagggagctgtgctttaatacttctacagtgagaaac--- 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tgaatctgcatctatcatagcagggagctgtgctttaatacttctacagtgagaaacagt 253
Query: 58 ----tctgaaggccattttaagtaacaagatgataatggttacagaggcaatgatcttcc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taactctgaaggccattttaagtaacaagatgataatggttacagaggcaatgatcttcc 313
Query: 114 tgtgaatcacagctctaagggatcgagattttagggaaacagaattttctgtatttgttc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgtgaatcacagctctaagggatcgagattttagggaaacagaattttctgtatttgttc 373
Query: 174 cactagatctggatgcttgatcaattgggggatggtgacaatcaaggattgtagaaacca 233
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 374 cactagatctggatgcttgatcaattgggggatggtgacaagcaaggattgtagaaacca 433
Query: 234 tgttgaaagtctcnctgaaatcttgtcattaaatgtataatgatgatgtcaactaagtgt 293
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgttgaaagccactctgaaatcttgtcattaaatgtataatgatgatgtcaactaagtgt 493
Query: 294 tcacactagccaatctatgaggaatagtaaacttgttactttcactcttttttt-actgt 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 494 tcacactagccaatctatgaggaatagtaaacttgttactttcactcttttttttactgt 553
Query: 353 cagttgtttgtatttttcctctccctctcaccgctggaaagaaaaagagcaaaacatggt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cagttgtttgtatttttcctctccctctcaccgctggaaagaaaaagagcaaaacatggt 613
Query: 413 gattcagctcagcccatatgtccagacctttagctttgctgaatgttttagcaaggagac 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gattcagctcagcccatatgtccagacctttagctttgctgaatgttttagcaaggagac 673
Query: 473 agatcaaagtcattggttgaggattctttatgaatttcattatcaatatttccccatgaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agatcaaagtcattggttgaggattctttatgaatttcattatcaatatttccccatgaa 733
Query: 533 taagagttaattataattgtgtaaaa 558
||||||||||||||||||||||||||
Sbjct: 734 taagagttaattataattgtgtaaaa 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space: 520052
Effective search space used: 520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_l07.g1 MSMg01no502_l07.g1 CHROMAT_FILE:
MSMg01no502_l07.g1 PHD_FILE: MSMg01no502_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:49 2005
(649 letters)
>mm_chr1_150721107_150722155
Length = 1049
Score = 1118 bits (578), Expect = 0.0
Identities = 633/652 (97%), Gaps = 6/652 (0%)
Strand = Plus / Minus
Query: 1 taggttttgtcattgttgcttatctgttcatttcatcatataaataacatttatttatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 taggttttgtcattgttgcttatctgttcatttcatcatataaataacatttatttatga 790
Query: 61 tataaagcatagtttcacttgaaccctatcaaatatcacatagtttattttagtaagaaa 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 789 tataaagcatagtttcacttgaaccctatcaaatattacatagtttattttagtaagaaa 730
Query: 121 tgcacattctgttatatacctaacagacatgtatagtatttcaatatagagacattggtt 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 729 tgcacattctgttatatacctaacagacatgtatagtatttcaatataaagaaattggtt 670
Query: 181 tatttgaatttggctttcaggaaaattagtcaatgtttggtatattttaataattttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tatttgaatttggctttcaggaaaattagtcaatgtttggtatattttaataattttctt 610
Query: 241 gt--atcatattttaatatttatggatatttaatcatctttccttcacattattctcagt 298
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtaaat-atattttaatatttatggatatttaatcatctttccttcacattattctcagt 551
Query: 299 ttgctaatttaattatagaaggtgatatttttgcaagacagtgaaaatgccttattgtat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttgctaatttaattatagaaggtgatatttttgcaagacagtgaaaatgccttattgtat 491
Query: 359 ttctttttgatctaacagtctagaatgatttctcctcatcataaaaatatccaagcacat 418
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 490 ttctttttgatctaacagtctagaatgatttctcctaatcataaaaatacccaagcacat 431
Query: 419 tcagtgggggacatttgacatcatcatgatacactcttttgttcat-ctaacactcagaa 477
||||| |||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct: 430 tcagt-ggggacatttgacaccatcatgatacactcttttgttcatgc-aacactcagaa 373
Query: 478 ctcatttgattcatgggcagtattttcaagagttgtatattaaaatctatgcttctactt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 372 ctcatttgattcatgggcagtattttcaagagttgtatattaaaatctatgcttccactt 313
Query: 538 tgtttatgcatgaaaataatttcatctcaatatactaaataagttccattaaactacact 597
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 312 tgtttctgcgtgaaaataatttcatctcaatatactaaataagttccattaaactacatt 253
Query: 598 ttaccagaaacacatcattgtgagcaaaaagaaaggaactaccttctatgta 649
||||||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 252 ttaccagaaacacatcactgtgatctaaaagaaaggaactaccttctatgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
