BAC Information

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BAC

Clone NameMSMg01-502N09
Chromosome1 (Build37)
Map Location 33,751,952 - 33,752,268
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik
Downstream geneRab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502N09.T7 (MSMg01no502_n09.b1)MSMg01-502N09.TJ (MSMg01no502_n09.g1)
ACCAG578097AG578098
length683702
length of high quality
(start - end)
317 (300 - 616)217 (81 - 297)
definitionCHROMAT_FILE: MSMg01no502_n09.b1 PHD_FILE: MSMg01no502_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:58 2005CHROMAT_FILE: MSMg01no502_n09.g1 PHD_FILE: MSMg01no502_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACAAATCAAAAGGAGCCGCGGAAATTCATGGGTACTAGAGACGTG
ACTGATGCTTGGCCTCATGGCTTCCTTTCTGTGTCCTTATGAGTATCAGC
TCTTCCCTTCTGCATAGAACAGCAGTATGGCACAGTCAAGAGACTATGGT
TCTGGTGGCAGACATACATAGCTATACTATGGGTTCAGCAGCAGTAATTC
ATTGAATACCTTCTGGGAAAGGTTATATAGCGTACTTGTAAATCCCCATT
TGCTAGTGGAAATGGGTCTCAAGAGTTTCAGTTGGCTTACTTTTGATTAT
CAGCCCTGACCTGTGAATTATATGTCCCCTTGCTGTGCTATCCTAAAGCA
AGGTCTCACGAAACAGTCTCCCCTTTGTATTCTGGACTTTAGTGGCATAA
ATATTTGACTAAAGGAGATTACTCCCTTCAATTATCTCTATTCATTTCTA
AAAGTTTCTTTAAACAATCTTTCTTTAATAGCTGTTCCAGGTTACTGTCC
TGTCTTTTCTCTTCTGCCCCAGTTCCCACATATTTATCTTCTGTCTCAGA
CTCATGGCTTTGCCAAGGCTGAATCTTCTCCAGTGACATGGCCCATCTGT
AGAATACAACTAGTGCCAAGGGTGTGGACTTTTATGCTCCTTAAGGATCT
GGTCCTTGGAAGCCAACCTTGTGACCCAGGCTN
CCTGGCGGCCGCCTGTTTCCTACGTGGGGTGAACTATAGAAGTAACTACA
GGAGCGGNNNGGNNGGNTGGNTGGNTGGNTTTGTTGTTGTTGCTGCTGCT
GCTGCTGTCTATTTTTTGAGACAGAGTTTCTCTGGGTAACCCTGGAAGTC
CTAAAACTCACTCTGTAGACCAGGCTGGTCTCAAACTCAGAGATCTACTT
GCCACTGCCTCCCAAGTACTGGAATTAATTTTTTGGAGCACCACTGTCAC
TAAGCAGGGCTCATGGGGCTCACAGAGACTGAACAATAAGCTGTTTTTTT
CTTTCTTGGGGCTTTGTAGGACTCCTAACAGTGGGAATGTTATGTCCCTG
GCTTGTTCACCAGCTCTTGGAAACCTTTACCTCCTACAGGGTTGCCTTGC
AATGAGGATTTGTGCCTGGTCTTATTGCTTCTTGTTGGTATCCCTGGGGG
CCCTGCTGTTACTGAATGGAACTGAATGGGAAGAGGAATGGGATATATTT
AAAAAGTGGAGGGAGTGACTGCATTTTTAATAAAAAAGATCCCCATAATT
AATGGATTCTATTCCCAGAGGTCATGATACTTCCGTTTTTATTAAACTAT
TAATGCTGTGAAAAGTTCTTGAACTAGATTTTTTTTTTAAAAACTGACTA
TCAATAATAGACTTTGTATGCCCGAGCATGCCTATATAAATTCTATAAAT
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_n09.b1 MSMg01no502_n09.b1 CHROMAT_FILE:
MSMg01no502_n09.b1 PHD_FILE: MSMg01no502_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:58 2005
         (317 letters)



>mm_chr1_33751752_33752468
          Length = 717

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagccctgacctgtgaattatatgtccccttgctgtgctatcctaaagcaaggtctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tcagccctgacctgtgaattatatgtccccttgctgtgctatcctaaagcaaggtctcac 458

                                                                       
Query: 61  gaaacagtctcccctttgtattctggactttagtggcataaatatttgactaaaggagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaaacagtctcccctttgtattctggactttagtggcataaatatttgactaaaggagat 398

                                                                       
Query: 121 tactcccttcaattatctctattcatttctaaaagtttctttaaacaatctttctttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tactcccttcaattatctctattcatttctaaaagtttctttaaacaatctttctttaat 338

                                                                       
Query: 181 agctgttccaggttactgtcctgtcttttctcttctgccccagttcccacatatttatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agctgttccaggttactgtcctgtcttttctcttctgccccagttcccacatatttatct 278

                                                                       
Query: 241 tctgtctcagactcatggctttgccaaggctgaatcttctccagtgacatggcccatctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tctgtctcagactcatggctttgccaaggctgaatcttctccagtgacatggcccatctg 218

                            
Query: 301 tagaatacaactagtgc 317
           |||||||||||||||||
Sbjct: 217 tagaatacaactagtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)