BAC Information

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BAC

Clone NameMSMg01-502O20
Chromosome1 (Build37)
Map Location 11,648,455 - 11,648,687
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneCpa6, LOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502O20.T7 (MSMg01no502_o20.b1)MSMg01-502O20.TJ (MSMg01no502_o20.g1)
ACCAG578164AG578165
length778786
length of high quality
(start - end)
608 (36 - 643)234 (83 - 316)
definitionCHROMAT_FILE: MSMg01no502_o20.b1 PHD_FILE: MSMg01no502_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:04 2005CHROMAT_FILE: MSMg01no502_o20.g1 PHD_FILE: MSMg01no502_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGTTGCCTACTGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATAAAAACAACCCTGAGATTCTACCTCACA
CCAGTCAGAATGGCTAAGATTAAAAATTCAGGTGACAGCAGATGCTGGCA
AGGATGTGGAGAAAGGGGAACACTCCTCCATTATTGGTGGGATTGCAAGC
TTGTACAACCACTCTGGAAATCTGTCTGGCGGTTCCTCAGAAAATTGGAC
ATAGTACTACCTGAGGATCCAGCAACACCTCTCCTGGGCATACATCCATA
AGATGTCCCAACCAGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTC
AGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACC
TGGAGGGTATCATCCTGAGTGAGGTAACACATTCACAAAAGAACTCAAAT
GATATGTTCTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATACCC
AAGATATAAGATACAATTTGTTAAACTCATGAAACCTAAGAAGAACGAAG
ACCCAAGTGTGGACACTTTGCCCCTTCTTAGAATGGGGACAAAACCCCCC
TGCAAGGAGTTACAGAGACAAAGTTTGG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCTAAAAAAGGGGTGAATGGNCGAACATTGTTTACAGTG
CTGATATAGGCTCTCTACTGCTCTGCCTTCATGACAGACGTAAAGGAGCC
TAGCACAGGAAGCAGCAAGACTCACATCAGGCTCCTGATTATGCCTGTTT
AGCATTAGATATTCCTCAAGTGATTGGCAGACAGGAAACCTAAACTACTA
ATTGTTCTTCAGGCAGATGTTGAGAGTTGAAATCAGAGGGTTGACATGAT
GTGATAGTTCTAATAATGGTTAGATCAAACCAGTACAGACAGCTTTCCTT
GTTAACTGTCTTATAAGTAAGATGTAGGGGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGACACACAACATTCTCGCTCATGTAATCCGAGTTGTCTACGTCGATA
GAATTTCTTTAATGACAGTGGCGTTTCCCCCTTTTGTCACCTCAATCAAT
CCGTATTATGCCGTTCTCGAACTTTAACTTCGCGTCTTTCCCCGCCATCA
TGTGCTCCTTTCTTCTGCTGTCCTATATTTTCGATTCCGCCCGTCCCCGG
GAGATTCCCTTTTTTTTTTTTTTCATTCCGCGTGCGGTTTCTTATCCCTT
TATTTACCTTACTTTCCGTTATTTTTTCATTCGTTTATTATTCCAACTGT
TTTTCTTTCCTGTTTTCCTGTCACTTCTCCCGTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_o20.g1 MSMg01no502_o20.g1 CHROMAT_FILE:
MSMg01no502_o20.g1 PHD_FILE: MSMg01no502_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:04 2005
         (234 letters)



>mm_chr1_11648255_11648887
          Length = 633

 Score =  406 bits (210), Expect = e-118
 Identities = 228/234 (97%), Gaps = 1/234 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgaacattgtttacagtgctgatataggctctctactgctctgccttcatgacagacgta 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 cgaacattgtttacagtgctgatataggctctctactggtctgccttcatgacagacgta 260

                                                                       
Query: 61  aaggagcctagcacaggaagcagcaagactcacatcaggctcctgattatgcctgtttag 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 a-ggagcctagcacaggaagcagcaagactcacatcaggctcctgattatgcctgtttag 319

                                                                       
Query: 121 cattagatattcctcaagtgattggcagacaggaaacctaaactactaattgttcttcag 180
           |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 320 cattagatcttcctcaagtgattggcagacaggaaacctaaactacttagtgttcttcag 379

                                                                 
Query: 181 gcagatgttgagagttgaaatcagagggttgacatgatgtgatagttctaataa 234
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 gcagatgttgagagttgaaatcagagggttggcatgatgtgatagttctaataa 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space:   140400
Effective search space used:   140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)