BAC Information

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BAC

Clone NameMSMg01-503C11
Chromosome1 (Build37)
Map Location 133,993,216 - 134,109,557
singlet/doubletdoublet
Overlap genePctk3, LOC100042221
Upstream geneMapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4
Downstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503C11.T7 (MSMg01no503_c11.b1)MSMg01-503C11.TJ (MSMg01no503_c11.g1)
ACCAG578338AG578339
length700707
length of high quality
(start - end)
240 (84 - 323)433 (90 - 522)
definitionCHROMAT_FILE: MSMg01no503_c11.b1 PHD_FILE: MSMg01no503_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:21 2005CHROMAT_FILE: MSMg01no503_c11.g1 PHD_FILE: MSMg01no503_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,109,318 - 134,109,557)(133,993,216 - 133,993,644)
sequence
CCCTTCTTTTCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAA
GATCCGCGGATTCTCTACAGTTCTCACATAGGGGAGCAAGTCATTTTTTC
TGCTGCTTTCTGACCCAAGGGCTAGGCCCACCCCAGTGCTGACCAACCCA
CATAGAATTCCTCAGTTTGTGTCCTCCTCGGAAGGGCTTATAGGGCCAAT
GAATGTGGGTCATGTCAACTTCAGGCTTCCACATAGAGGCTCTGATGGCT
CTCTTGTCAGTGGAAATTGACCCACCTTGTAACTAGGAAGGTATAGGTGC
AGAAAACTTACAGGTTGGGGGCTGTTTTTGTCCCGGGACACATGGACACG
GACAGAGGAAATGAAAACTGGACAGTTTCCTCTTGTCCTTACAGACATTT
GATTGATTCCTGCACGGCAGGAACGGCCGACCCATCATCTTGGATACACA
GCTCCCATAGCTAAGAGTAAAGTGTCTAAAGGAGAGCTGCTACTTGCAAG
CTCACACCCCTCAAAATTCCTGACGCCTTCTTCTCTGGTTTTAGGCTTCG
CGCACGCGCATTATGCCTTCCCCGCTTTTCTTGGCTTTATATTCTTGCCA
GATTGAACTCGACTTCTAAACAACTATTTTGCCAGCTTTCTACGTATATA
TGTTAGTGACGCGTGCTGGCTGTTTTTTCCTCCCAGTTTCCCTCTTTTCC

TTTTTCGCTTTTTTCCATGAAGGGTXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTCTTCCC
TAGATCCTCAGATGCAAAGATCCAGGGATCCTCAATCTGCATGTCTGTCT
CCTTCCCATACCCCACCACTCAGCACTGGAAGCTGAGCCTAAGGAGGCAG
AGGCCTGGCTTAAGAGACACTGGTGGACATACCCTCCTATCCAGCCAGTG
CTGCCTCCTCCTGGCCCGTATTCACAGAGAGGTTTAGCAAGAGGAGAAAG
CCCAACCTGGGAACTCTGATCCCTGGCTTTCTTTATCACCTTCACTTGCA
GCCTGGGTGGTAAGGACTAACCTTGGATGTGGCAAGGACACAAACAGAGA
CTCCGGACTAATTTAGATTCCCCCTACACTCAAAATCTTCCGTCAATAGG
CAATCGTGACTAACATTTACTGATCCCTTAATGTGTGCCAAGCCTTTTCT
GTGTTGGGAAGTGAGTACATTTATTACATTTTGCACATAGGATACTGAGG
ACCAGGGTGGCTCAGTTAGCTAGTCGTCCCGTTAGGATATGAACTCTATG
TCCTTAACCCTTGAATCTGTCCCGCTATTGTTATGCTGTCTACTTTCTTA
TTTCCTAAATCTACCTAACATCTGACCTTGTCTCCGCCCAGGGTCTTTCT
TATCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_c11.b1 MSMg01no503_c11.b1 CHROMAT_FILE:
MSMg01no503_c11.b1 PHD_FILE: MSMg01no503_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:21 2005
         (240 letters)



>mm_chr1_134109118_134109757
          Length = 640

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcaagtcattttttctgctgctttctgacccaagggctaggcccaccccagtgctgac 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 gagcaagtcattttttctgctgctttctgacccaagggttaggcccaccccagtgctgac 381

                                                                       
Query: 61  caacccacatagaattcctcagtttgtgtcctcctcggaagggcttatagggccaatgaa 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 caacccacatagaattcctcagtttgtgtcctcctcggaatggcttatagggccaatgaa 321

                                                                       
Query: 121 tgtgggtcatgtcaacttcaggcttccacatagaggctctgatggctctcttgtcagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 tgtgggtcatgtcaacttcaggcttccacatagaggctctgatggctctcttggcagtgg 261

                                                                       
Query: 181 aaattgacccaccttgtaactaggaaggtataggtgcagaaaacttacaggttgggggct 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 260 aaattgacccaccttgtaactaggagggtataggtgcagaaaacttacaggttgggggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no503_c11.g1 MSMg01no503_c11.g1 CHROMAT_FILE:
MSMg01no503_c11.g1 PHD_FILE: MSMg01no503_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:21 2005
         (433 letters)



>mm_chr1_133993016_133993848
          Length = 833

 Score =  822 bits (425), Expect = 0.0
 Identities = 428/429 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttcttccctagatcctcagatgcaaagatccagggatcctcaatctgcatgtctgtc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 catttcttccctagatcctcagatgcaaagatccagggatccacaatctgcatgtctgtc 260

                                                                       
Query: 61  tccttcccataccccaccactcagcactggaagctgagcctaaggaggcagaggcctggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttcccataccccaccactcagcactggaagctgagcctaaggaggcagaggcctggc 320

                                                                       
Query: 121 ttaagagacactggtggacataccctcctatccagccagtgctgcctcctcctggcccgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagagacactggtggacataccctcctatccagccagtgctgcctcctcctggcccgt 380

                                                                       
Query: 181 attcacagagaggtttagcaagaggagaaagcccaacctgggaactctgatccctggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcacagagaggtttagcaagaggagaaagcccaacctgggaactctgatccctggctt 440

                                                                       
Query: 241 tctttatcaccttcacttgcagcctgggtggtaaggactaaccttggatgtggcaaggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctttatcaccttcacttgcagcctgggtggtaaggactaaccttggatgtggcaaggac 500

                                                                       
Query: 301 acaaacagagactccggactaatttagattccccctacactcaaaatcttccgtcaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaacagagactccggactaatttagattccccctacactcaaaatcttccgtcaatag 560

                                                                       
Query: 361 gcaatcgtgactaacatttactgatcccttaatgtgtgccaagccttttctgtgttggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaatcgtgactaacatttactgatcccttaatgtgtgccaagccttttctgtgttggga 620

                    
Query: 421 agtgagtac 429
           |||||||||
Sbjct: 621 agtgagtac 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)