BAC Information

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BAC

Clone NameMSMg01-503F11
Chromosome1 (Build37)
Map Location 196,485,547 - 196,486,069
singlet/doubletsinglet
Overlap genePlxna2
Upstream geneLOC667208, EG623172
Downstream geneCd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503F11.T7 (MSMg01no503_f11.b1)MSMg01-503F11.TJ (MSMg01no503_f11.g1)
ACCAG578480AG578481
length708718
length of high quality
(start - end)
523 (85 - 607)299 (331 - 629)
definitionCHROMAT_FILE: MSMg01no503_f11.b1 PHD_FILE: MSMg01no503_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:35 2005CHROMAT_FILE: MSMg01no503_f11.g1 PHD_FILE: MSMg01no503_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTATCCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGA
CAGATCCGCGGAATCACTACATTCCCAAGAGCCAACTTGTAAAAGCCACG
TCCCCAGAAAAGTGCCCACCACATACATACATGTCCTGTAGGCAACTAGG
TCTTGAGTGTCTCTGTCAGCAGGGACTTCCAAAGGCCAGCTGCTCCAGCC
CCTTCCCTTTAGGGTGAGACTGATGTACATAAAGGAAACTCTGTGGTTTC
ATGTGACCTAGTTCTGAATATAACCTAGCAGCAATGCGACCTCTGAATTC
CAGTGACCTGTCCTGTAAAGCATTTTTTATTCTTACCCTTGCTCCATGAA
ATGGTAATTTGTTCTTGGAATAGTATTTATGGAATGTTATGGTGGTTTGA
ATGAGACTGCCTCTCATAGGCTCATATATTTGAATGCTTCGTTGCTAGTT
TGTGAAACCATTTGGGAAGAATTAGTTGGTGTGACCTTTTAGGAAGAGGT
GTGTCACAGAGAATGGGACTTAGGTTTCAAAAGCTTATGCTATGTCCTCT
CTGTCTCTGTCTGTGTCTCTCTGTGTCTCTCTGTCTCCCTCATCTCTCCT
CTCTGCCTTGTTAAGATGTAAGTTCTCAGATACTGCTCCAGCCTTGTCCC
CGCCTGCCTGCTGCCATGTTCCCTGCCATAATAGTCATGAACTGTAATCC
TCATGAAC
CCTTTCTTTTCCCAATTCTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATGTCCAAAACCT
GTTCTTATTTTGTGTTTGTACCACAGTAAAAGCCAAGATTTTAAGCTCTA
TTAAAAACAAAACAAATGACCACTAAGACTTTATCTATTTGTGTTCATTA
AAAAAACTAATAGTGACATATTATTTTTAAATATCATGCAGTTAATATAT
TTGGAGTTATTTAAAATTTATATTGAGAAAAACGTGTGTATTTTCAGTAT
TGCTGTAGACAAACATTTTCATATTTTTTTTCAATTGATTGTTGTTTTAT
ATCAAACAACTTTTATAATACTCATTTTTATTGTTACAATATTTTGTAAA
TTTTAAAGAATATGATAAAAAATGAAAGATATCGCAGGTTTTGAAGGGGG
GCTCTCTGGGAGGAGTTGGGGTACAAAAGGGAAAGAAGAACATGATGTAA
GTCTATTTACTCAAAATATGTTTTTAAATGTTAACAAATTCAAATAAATT
GAAATTATATATCTTTTCTCATCATACAAAAAAGAAAGAAAAAGAAAATA
AGGATAAAAGCTGACCTGGGTCCTGTGACCTGCAGCCTATGCTGTGCAGA
ACCCTAACAGGGTTGGCCCATGAGTCCTTAAAACATATTCGGTGCATATT
GAACGAATCCATTTGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_f11.b1 MSMg01no503_f11.b1 CHROMAT_FILE:
MSMg01no503_f11.b1 PHD_FILE: MSMg01no503_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:35 2005
         (523 letters)



>mm_chr1_196485347_196486269
          Length = 923

 Score =  957 bits (495), Expect = 0.0
 Identities = 516/527 (97%), Gaps = 8/527 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgtaaaagccacgtccccagaaaagtgcccaccacatacatacatgtcctgtaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgtaaaagccacgtccccagaaaagtgcccaccacatacatacatgtcctgtaggca 260

                                                                       
Query: 61  actaggtcttgagtgtctctgtcagcagggacttccaaaggccagctgctccagcccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaggtcttgagtgtctctgtcagcagggacttccaaaggccagctgctccagcccctt 320

                                                                       
Query: 121 ccctttagggtgagactgatgtacataaaggaaactctgtggtttcatgtgacctagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctttagggtgagactgatgtacataaaggaaactctgtggtttcatgtgacctagttc 380

                                                                       
Query: 181 tgaatataacctagcagcaatgcgacctctgaattccagtgacctgtcctgtaaagca-- 238
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  
Sbjct: 381 tgaatataacctagcagcaatgagacctctgaattccagtgacctgtcctgtaaagcaaa 440

                                                                       
Query: 239 --ttttttattcttacccttgctccatgaaatggtaatttgttcttggaatagtatttat 296
             |     ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtg----attcttacccttgctccatgaaatggtaatttgttcttggaatagtatttat 496

                                                                       
Query: 297 ggaatgttatggtggtttgaatgagactgcctctcataggctcatatatttgaatgcttc 356
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 497 ggaatgttatggtggtttgaatgagactgcctctcataggctcatatatttgaatgtttc 556

                                                                       
Query: 357 gttgctagtttgtgaaaccatttgggaagaattagttggtgtgaccttttaggaagaggt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gttgctagtttgtgaaaccatttgggaagaattagttggtgtgaccttttaggaagaggt 616

                                                                       
Query: 417 gtgtcacagagaatgggacttaggtttcaaaagcttatgctatgtcctctctgtctctgt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtgtcacagagaatgggacttaggtttcaaaagcttatgctatgtcctctctgtctctgt 676

                                                          
Query: 477 ctgtgtctctctgtgtctctctgtctccctcatctctcctctctgcc 523
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctgtgtctctctgtgtctctctgtctccctcatctctcctctctgcc 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)