TTTTTTTTCNNNTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TCGAGGATCCGCGGAATTCATCCTTTTATCTGTGCTACAATCGTTTGGAT
GTGGTAGTCAAGCGTTGAGAGAGGCATTTTAGCAAGTACGAAATAGAATA
TACTAAGTGCGCCGGAAAGCTCTCTCTGCTAGCAGCCGGTTTCGCTCCCT
AATTAGTGGCGCTGTCCTTCAGCACCACTGTGCCTGTGCGCCCTGAGCGC
TTGGCCACACCTTTACTGTTTTTCCTTCCCAACAAACCCCAATCAGCAAG
ACTTACCGAGAGCCCCCCTCCCCCCCACCTTTTCACGGTGTATGCTTTAT
TTGTCCAAAACTTATTAGTGGTTAAATTTAACATTTATAAACTTGTCTCT
GTTTTATATAATTTCAATATGGCTGAATTCAGGCCTGACTGGAAAGCTTA
ATAGTATCTCTTTTAAATATCTATAAGAAGTGATATCTATATGCTAAAAA
CTAGCTTTGAAGCCTCAAAAGTGTGAAACAACAGATTCGAGTAATTCTTT
TAAACTCAAAATACAGTGCAGGCACACACTTTTGGAGCAGCCAAGTTCCA
ACAGATAAACTTCCTTTCTTTTCTCTCTTAATGTTTATAGGGGATCCTGG
GTCATGAAATCTGTGTTTTCACACAGAATATTCCACTGTTTTCAAAGAGT
GAATTTCTCAACCCCCCACCCCCAAAAGCAAATCATTCATC

GCGTTTTTTTTTCCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACC
TAAACATGATAAAAGCAATCTACAGCAAACCAGGAGCCAACATCAAAGTA
AATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGG
CTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCA
GAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAG
GAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGA
CCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTG
AAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTAC
ACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTC
AATAGTCACAAATAATATAAAATATCTCGGCGTGAATCTAACTAAGGAAG
TGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAA
GAAGATCTCAGAAGATGGAAAGAACTCCCATGCTCATGGGATGGCAGGAT
CAATATTGTAAAAATGGCTATCTTGCCCAAAGCAATCTACAGATTTCATG
AAATCCCCATCAAAANTCCAACTCAATTCTTCAACGAAATAGAA

Query= MSMg01no503_f21.b1 MSMg01no503_f21.b1 CHROMAT_FILE:
MSMg01no503_f21.b1 PHD_FILE: MSMg01no503_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:37 2005
         (567 letters)



>mm_chr1_19099325_19100290
          Length = 966

 Score = 1073 bits (555), Expect = 0.0
 Identities = 561/563 (99%), Gaps = 1/563 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcatccttttatctgtgctacaatcgtttggatgtggtagtcaagcgttgagaga 64
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ggaattcatccttttagctgt-ctacaatcgtttggatgtggtagtcaagcgttgagaga 708

                                                                       
Query: 65  ggcattttagcaagtacgaaatagaatatactaagtgcgccggaaagctctctctgctag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ggcattttagcaagtacgaaatagaatatactaagtgcgccggaaagctctctctgctag 648

                                                                       
Query: 125 cagccggtttcgctccctaattagtggcgctgtccttcagcaccactgtgcctgtgcgcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cagccggtttcgctccctaattagtggcgctgtccttcagcaccactgtgcctgtgcgcc 588

                                                                       
Query: 185 ctgagcgcttggccacacctttactgtttttccttcccaacaaaccccaatcagcaagac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctgagcgcttggccacacctttactgtttttccttcccaacaaaccccaatcagcaagac 528

                                                                       
Query: 245 ttaccgagagcccccctcccccccaccttttcacggtgtatgctttatttgtccaaaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttaccgagagcccccctcccccccaccttttcacggtgtatgctttatttgtccaaaact 468

                                                                       
Query: 305 tattagtggttaaatttaacatttataaacttgtctctgttttatataatttcaatatgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tattagtggttaaatttaacatttataaacttgtctctgttttatataatttcaatatgg 408

                                                                       
Query: 365 ctgaattcaggcctgactggaaagcttaatagtatctcttttaaatatctataagaagtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctgaattcaggcctgactggaaagcttaatagtatctcttttaaatatctataagaagtg 348

                                                                       
Query: 425 atatctatatgctaaaaactagctttgaagcctcaaaagtgtgaaacaacagattcgagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atatctatatgctaaaaactagctttgaagcctcaaaagtgtgaaacaacagattcgagt 288

                                                                       
Query: 485 aattcttttaaactcaaaatacagtgcaggcacacacttttggagcagccaagttccaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aattcttttaaactcaaaatacagtgcaggcacacacttttggagcagccaagttccaac 228

                                  
Query: 545 agataaacttcctttcttttctc 567
           |||||||||||||||||||||||
Sbjct: 227 agataaacttcctttcttttctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 966
Length adjustment: 10
Effective length of query: 557
Effective length of database: 956
Effective search space:   532492
Effective search space used:   532492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)