Query= MSMg01no503_g03.b1 MSMg01no503_g03.b1 CHROMAT_FILE:
MSMg01no503_g03.b1 PHD_FILE: MSMg01no503_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:38 2005
(265 letters)
>mm_chr1_140533544_140534208
Length = 665
Score = 484 bits (250), Expect = e-141
Identities = 259/262 (98%)
Strand = Plus / Minus
Query: 4 ggaattctagttcttctctcacttatagcctttagacagatgtgctcagtaagggggaaa 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggaattctagttcctccctcacttatagcctttagacagatgtgctcagtaagggggaaa 406
Query: 64 taagagaccagggttcacttctgcctgagaaacaagggtgtttctaggattgctgcttct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 taagagaccagggttcacttctgcctgagaaacaagggtgtttctaggattgctgcttct 346
Query: 124 ggggtccctgccctgagctgacagtggtttctaacccctgttcccatcattctcccctct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggggtccctgccctgagctgacagtggtttctaacccctgttcccatcattctcccctct 286
Query: 184 gaggattttccaatagagaattggaaaaacaatggctctgtcaggtgtggctgttgaggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gaggattttccaatagagaattggaaaaacaatggctctgtcaggtgtggctgttgaggt 226
Query: 244 acaccttcaggttatctatcta 265
|||| |||||||||||||||||
Sbjct: 225 acacattcaggttatctatcta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space: 167936
Effective search space used: 167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no503_g03.g1 MSMg01no503_g03.g1 CHROMAT_FILE:
MSMg01no503_g03.g1 PHD_FILE: MSMg01no503_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:38 2005
(349 letters)
>mm_chr1_140410318_140411069
Length = 752
Score = 621 bits (321), Expect = 0.0
Identities = 343/351 (97%), Gaps = 3/351 (0%)
Strand = Plus / Plus
Query: 1 ttaagtctattaaaattcactttggtctccatatgaaataattttagactgacacattac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttaagtctattaaaattcactttggtctccatatgaaataattttagactgatacattac 260
Query: 61 ccagatctggagaggtacataaatgtgtaatccctaagtagaacatttgcaaaatgtagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagatctggagaggtacataaatgtgtaatccctaagtagaacatttgcaaaatgtagt 320
Query: 121 aaaactc-gactgaatccactttgaattgttcaaaattgttgtgtgattcggatttcagg 179
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaactcagactgaatccactttgaattgttcaaaattgttgtgtgattcggatttcagg 380
Query: 180 ttaatcattagttcggtaaagctcaaacactacagcctactcaagagtgactgcaaggca 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ttaatcattagttcggtaaagctcaaacactacagcctactcaagagtgactgcaacgca 440
Query: 240 tcatttaaacaagtggcatgtgtgtacaagcacgtgcaattagtgtgtgtgcacatgcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatttaaacaagtggcatgtgtgtacaagcacgtgcaattagtgtgtgtgcacatgcaa 500
Query: 300 tgataaactagt--ttcaagtgagttaccgacaaggtgttgttaggacagc 348
|||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 501 tgataaactagtgtttcaagtgagttactgacaaggtgttgttaggacagc 551
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 752
Length adjustment: 9
Effective length of query: 340
Effective length of database: 743
Effective search space: 252620
Effective search space used: 252620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
