GCCTTTTTTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTTGCTTCTCCCTTCAGGATTAAGGAGCACTGA
CCTTTGGAACATGGTCTTTATATGCATGTCAGAGTATTTTTAAGAATGGG
AAAATCCAGGATACGAATAAACAACAACCAGTTCCAAATGGGAGTTATTT
TTAGACCTGAGATTCCAAAGTATATAAAGCCACAGATATCAGAATGGTTC
TCACCCTAGTAACATGCCTTCCTGTCCCCTCTAATATACTTTCCACCTTC
TGTAGCATGTGCTCACACTCTTGGTGTTGTTTACACACACACACACACAC
ACACACACACACACACTCACTCACAATTTTTAGATTTTTTTTTGAGACAG
TGTAACTATATAGCCCAGGATAGATGGTCTTAAACACTTTGGGGTACGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGAGAGTGTGCGCGCCCGCGTTAGGGTGGGGTGTTTGTTTTTTTGTTG
GGGGGGGCGTGTCTCGCGTGAGTGAGTTATACCCATTTGCGTGCCTGTTT
TTTTATACCTTGTTTTTCGTGAAAAAACTCACCCTTATTTTTGCGCGTGT
TTTGCGTATATACGTTGTGTGCTCTTTTCTATATATATACACACCGATAT
ACATATAGAGA

TTTTTCTTTACGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCTTTAAGTCAT
GTCATAATTTCCAACAAAATGTAAAGATTACGTGGTTTAAAAATTAGCTA
AAAATATATGAGCTGGTTTATGTATTTATCTTATCTCAAAGAATTTTCTT
TGGCAGATGGAACTGTAAACTAGTTTTATGAGGTGTATGGTTAGGTTTAA
TGGGAGGGGAATGTTTGACAGTTAAGCTTTAGGCTACAAACATTCTAGCC
TAAAGAAGAGATTGTTTTTTTTTTTTTTTTAAGAGATGCCTTTGCAGGTA
AGTTCAATTTTCTCATTGTGCACAAGTCTTTCTATTTCCAACCTAGAGGG
AAAAAAAGTAGATACCTTTCGAGGGGCGCTCCCTTCCTGTGTGTTTCTAA
TTTCCCCAGCCTCTTGTAGCTGAGCTCCCCTTTTTCCAGAAGGGCCTTCC
ATTGGCTTGGAAGCCCCTTTTAGCTTTGTGGGAGGACCCCTTTTGGTCCT
TTTGTGTATGTATGCTTCGATGCTTTCATTTATTCCATTCTTTCTTCCTT
TCCTTTATATCTTTTATCAACGTCCTTTTTTTTTTCTTTCCCCTTTTTTT
CCCCCTCTCCCGCTCCCCCTTTTTATTCATCACTTTTCTTTTTCATGGGA
TAATATGTTATCTTGGGAGTTTCATCCCACCCTCGCGCTTTTTTTTTTTC
ACTTTTG

Query= MSMg01no503_g15.b1 MSMg01no503_g15.b1 CHROMAT_FILE:
MSMg01no503_g15.b1 PHD_FILE: MSMg01no503_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:41 2005
         (239 letters)



>mm_chr1_188430560_188431198
          Length = 639

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaggagcactgacctttggaacatggtctttatatgcatgtcagagtatttttaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaggagcactgacctttggaacatggtctttatatgcatgtcagagtatttttaagaa 260

                                                                       
Query: 61  tgggaaaatccaggatacgaataaacaacaaccagttccaaatgggagttatttttagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggaaaatccaggatacgaataaacaacaaccagttccaaatgggagttatttttagac 320

                                                                       
Query: 121 ctgagattccaaagtatataaagccacagatatcagaatggttctcaccctagtaacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagattccaaagtatataaagccacagatatcagaatggttctcaccctagtaacatg 380

                                                                     
Query: 181 ccttcctgtcccctctaatatactttccaccttctgtagcatgtgctcacactcttgg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttcctgtcccctctaatatactttccaccttctgtagcatgtgctcacactcttgg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no503_g15.g1 MSMg01no503_g15.g1 CHROMAT_FILE:
MSMg01no503_g15.g1 PHD_FILE: MSMg01no503_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:41 2005
         (189 letters)



>mm_chr1_188480577_188481165
          Length = 589

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgctttaagtcatgtcataatttccaacaaaatgtaaagattacgtggtttaaaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 catgctttaagtcatgtcataatttccaacaaaatgtaaagattacgtggtttaaaaatt 330

                                                                       
Query: 61  agctaaaaatatatgagctggtttatgtatttatcttatctcaaagaattttctttggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agctaaaaatatatgagctggtttatgtatttatcttatctcaaagaattttctttggca 270

                                                                       
Query: 121 gatggaactgtaaactagttttatgaggtgtatggttaggtttaatgggaggggaatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gatggaactgtaaactagttttatgaggtgtatggttaggtttaatgggaggggaatgtt 210

                    
Query: 181 tgacagtta 189
           |||||||||
Sbjct: 209 tgacagtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)