Query= MSMg01no503_k19.b1 MSMg01no503_k19.b1 CHROMAT_FILE:
MSMg01no503_k19.b1 PHD_FILE: MSMg01no503_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:01 2005
(611 letters)
>mm_chr1_23191152_23192171
Length = 1020
Score = 1081 bits (559), Expect = 0.0
Identities = 601/619 (97%), Gaps = 9/619 (1%)
Strand = Plus / Minus
Query: 2 accagcccataaacacgtgaattatattattgatcacacacatttaaaggtggcaagaac 61
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 820 accagcccataaacacgtgaattatactattgatcacacacatttaaaggtggcaagaac 761
Query: 62 ttgggagtgcgtgggtgaatgggttaaggtgtggccacagtaccagttactacatgtcta 121
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 760 ttgggagtgcgtgggtgaatgggttaaggtgtggccacagtacgagttactacatgacta 701
Query: 122 ttggagttaagattcgtatgcctcatccaggaagtcagtgctccgagcctgtcctggatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ttggagttaagattcgtatgcctcatccaggaagtcagtgctccgagcctgtcctggatt 641
Query: 182 tcctcaaacacaattggggaaggaaagggtgaagcttcctcttgctgtttcaccgcatgc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 640 tcctcaaacacaattggggaaggaaagggtgaagcttcctcttgctgtttcactgcatgc 581
Query: 242 acagggctttctctcctatcttgtgcagtgatcagacacttcagctaggttgcagcagta 301
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 580 acagggctttctctcctatcttgtgcagtgatcagacacttcggctaggttgcagcagta 521
Query: 302 gctggggtgaagctaaagggctctctt-tggggggg--atttcaggacctgattttactg 358
||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| |||
Sbjct: 520 gctggggcgaagctaaagggctctcttgtgggggggggatttcaggacctgattttgctg 461
Query: 359 tagacttgagagagaatcttcgggacatccagaaagacatccgggtctgaatgagaacgg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 460 tagacttgagagagaatcttcgggacatccagaaagacatccgggtctgaatgagaatgg 401
Query: 419 t------gcctcatggaaaggaactacatagagacactcaggctggcttttccatcagtt 472
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttctgatgcctcatggaaaggaactacatagagacactcaggctggcttttccatcagtt 341
Query: 473 ccggtttcagtgtaggctgagtgcctgatgttggttaggattctgttgtttctctcttcc 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 ccggtttcagtgtaggctgagtgcctgatgttggttaggattctgttgtttctcccttcc 281
Query: 533 accactacgaatattataccaattattatatatttccaagtatcttttagtgttaattgc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 accactacgaatattataccaattattatatatttccaagtatcttttagtgttaattgc 221
Query: 593 cttgaaaattgagataatg 611
|||||||||||||||||||
Sbjct: 220 cttgaaaattgagataatg 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1020
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1010
Effective search space: 607010
Effective search space used: 607010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_k19.g1 MSMg01no503_k19.g1 CHROMAT_FILE:
MSMg01no503_k19.g1 PHD_FILE: MSMg01no503_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:01 2005
(576 letters)
>mm_chr1_23055656_23056631
Length = 976
Score = 731 bits (378), Expect = 0.0
Identities = 481/576 (83%), Gaps = 93/576 (16%)
Strand = Plus / Plus
Query: 1 atgttaacatcgccctctgaatttaaggctgctaaaatactaggtttattttgaatcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 atgttaacatcgccctctgaatttaaggctgctaaaatactaggtttattttgaatcctc 268
Query: 61 acgagcacaagaactatagacaatttctgggctctttaactattatcttttctttgggaa 120
||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 269 acgagcacaagaactatagacaatt--------ctttaactattatcttttctttgggaa 320
Query: 121 ataggaaaaccctaaacctgtatttaataatctgatgataataagtaaagatgagatgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataggaaaaccctaaacctgtatttaataatctgatgataataagtaaagatgagatgcc 380
Query: 181 ttttgctaggatatttctttcagaagaggagtgtgcttgacaataattagacaataatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgctaggatatttctttcagaagaggagtgtgcttgacaataattagacaataatta 440
Query: 241 ttatatactatacagaatgctaagtctgaaaggtgtgggtcctactggggacaagttgtt 300
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagatacaatacagaatgctaagtctgaaaggtgtgggtcctactggggacaagttgtt 500
Query: 301 tacagtattatctgcggtcatcctcctcatgtgagtgaggcagtgcaccactcccagctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacagtattatctgcggtcatcctcctcatgtgagtgaggcagtgcaccactcccagctt 560
Query: 361 tttctccttgagtgctggtccttccaagggtgttctcacccagccagtccttatgccctt 420
|||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctccttgagtgctggtccttccaagggtgttctc----------------------- 597
Query: 421 ggtagactcccttcggttcacttaatcattaaaactttctctctgcctctgacttctgca 480
Sbjct: 597 ------------------------------------------------------------ 597
Query: 481 tcttcccacagtacagggtcatgatactgaggctgctctcctcaatgtgtttataaaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 --ttcccacagtacagggtcatgatactgaggctgctctcctcaatgtgtttataaaaag 655
Query: 541 ataaaggtataggaatatgttctatgggggtgtggt 576
||||||||||||||||||||||||||||||||||||
Sbjct: 656 ataaaggtataggaatatgttctatgggggtgtggt 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
