Query= MSMg01no503_o04.b1 MSMg01no503_o04.b1 CHROMAT_FILE:
MSMg01no503_o04.b1 PHD_FILE: MSMg01no503_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:18 2005
(183 letters)
>mm_chr1_12598862_12599446
Length = 585
Score = 311 bits (161), Expect = 1e-89
Identities = 179/187 (95%), Gaps = 6/187 (3%)
Strand = Plus / Plus
Query: 1 attcctatagccaaccttcctacctgattcagtcaagctacaagttttaaagagcaaaat 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 attcctatagccaaccttcctacctgattcagtcaagcaacaagttttaaagagcaaaat 260
Query: 61 tttacctactttgtcgaaaccttattgaaagattgattaatagcataaatcagtggcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacctactttgtcgaaaccttattgaaagattgattaatagcataaatcagtggcata 320
Query: 121 agaaatgcttgctaatgaaaaataaaaa----gaaggaaccgaaggaagaaagtatggag 176
|||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||
Sbjct: 321 agaaatgcttgctaatgaaaaaaaaaaaaaaagaaggaac-gaaggaagaaagta-ggag 378
Query: 177 cacattc 183
|||||||
Sbjct: 379 cacattc 385
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 585
Length adjustment: 8
Effective length of query: 175
Effective length of database: 577
Effective search space: 100975
Effective search space used: 100975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no503_o04.g1 MSMg01no503_o04.g1 CHROMAT_FILE:
MSMg01no503_o04.g1 PHD_FILE: MSMg01no503_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:18 2005
(480 letters)
>mm_chr1_12731265_12732145
Length = 881
Score = 839 bits (434), Expect = 0.0
Identities = 455/462 (98%), Gaps = 3/462 (0%)
Strand = Plus / Minus
Query: 1 tgtctcagtaactggggtggctggtgattttagcatcaact-atggtaacacacatgtag 59
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 661 tgtctcagtaactggggtggctggtgattttagcatcaa-tgatggtaacacacatgtag 603
Query: 60 gggcaatct-ggagaaagtggtgggaatggataaacatttgaaggaagaattattggaaa 118
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gggcaatctgggagaaagtggtgggaatggataaacatttgaaggaagaattattggaaa 543
Query: 119 agtacttcaaaggctcaaatagtcacaaacatggcgagggcagtgtagtgaatgccataa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agtacttcaaaggctcaaatagtcacaaacatggcgagggcagtgtagtgaatgccataa 483
Query: 179 gcaaaacttacacaccataggattttgataaatttaaaattcagaattttccacttttag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gcaaaacttacacaccataggattttgataaatttaaaattcagaattttccacttttag 423
Query: 239 tacctacactgcacaacaaacagaaatacaaccaatcatctcctggatagagttatcgaa 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 422 tacctacactgcacaacaaacagaaatacaaccaatcatctcctggatagagttatggaa 363
Query: 299 gacactgtatgagattaccattaggctgtgttcagtgttcacatgacatatatatgcatt 358
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 362 gacactgtatgagattaccattaggctgtgttcagtgttcacatgatatatatatgcatt 303
Query: 359 ttgtgtttagatgagtctcatctctaagatcacattaggtatgtaactattctaaaatct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttgtgtttagatgagtctcatctctaagatcacattaggtatgtaactattctaaaatct 243
Query: 419 aaacaatacaaagattttggataattactgttttatatatat 460
|||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 242 aaacaacacaaagattttggataattactgttatatatatat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 881
Length adjustment: 10
Effective length of query: 470
Effective length of database: 871
Effective search space: 409370
Effective search space used: 409370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
