NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAACTTGGAAGCCAAGAAGCCTAAAAAAACTTCTTGGAAAAAT
GCAGCCTGCTCACAAATGTCCAGTCCACTGGGACTGGAGGAGGCAGAGTT
AAGAGTCAGAGGAGAAGTGACTCATGCTCTGTGAGGAGCCCTTTCTAGCC
CTGTCTAGGCAGCTGTCTGAAGGAGGATAAGGGAGGGCTGGGGCTGGCTG
CCTCTGAGCTCAGGCATGCCAAGGCGCCTGAGTTCCAGGGTCACATGTGA
CAGTCACAGCAGCCATAGTAACCCCTTCCAGCCCAAGCCATGGCCTCGAC
AGGTGGCTGGGGGTCGGAGGTGTGGGTCCAGGTCAAATACCCTGTTCTTT
TCTGAATATTAACATCTACCCACGCTAGGCCTCAGCGTGCTGGAGCAATT
CATCCTATTTTCCTAGCAGCCTTCCTTTCTGCTGTTTAAATAAGAACTGA
AAAACTACCCAAATATAGACACAACAAATCCAGCTGCTACCTAGACTCAG
ATAGCCTCAGTGTCATTTGCCTATCAGAAAAAGAAAACAAAACAAAACAA
AACAAAAACAGGCGATTCATAATCACTCCAAGGCAACTGTAGACAGCAAC
CAGTTCTGACTCTTGGTTTTCTGTGTCACTGACTACTGAATTTGGAGTTT
TAATAGGAAGTCAGACATCTGGTGAGACCGGGGTGGGGGGGGGGTGGGGG
GNANNNNNNNNNNTTNNNNNN

NNCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAAGCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCTGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATACCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTATGCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTTACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT
AAGTGGATATTAGCCCAAAACCTANGATACCCAAGATATAAGATACAATT
TCCTAAACACATGAAACTCTAGAAAAATAAGACTGAAGTGTGGACACTAT
GCCCCTCTTTAGAATGGGAACAAACACCCTTGTGAGGAGTT

Query= MSMg01no504_a20.b1 MSMg01no504_a20.b1 CHROMAT_FILE:
MSMg01no504_a20.b1 PHD_FILE: MSMg01no504_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:31 2005
         (669 letters)



>mm_chr1_20998770_20999839
          Length = 1070

 Score = 1205 bits (623), Expect = 0.0
 Identities = 656/667 (98%), Gaps = 2/667 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaacttggaagccaagaagcctaaaaaaacttcttggaaaaatgcagcctgct 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 gaattcagaacttggaagccaagaagcctaaaaaaacttctcggaaaaatgcagcctgct 263

                                                                       
Query: 65  cacaaatgtccagtccactgggactggaggaggcagagttaagagtcagaggagaagtga 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 cacaaatgtccagtccactgggactgtaggaggcagagttaagagtcagaggagaagtga 323

                                                                       
Query: 125 ctcatgctctgtgaggagccctttctagccctgtctaggcagctgtctgaaggaggataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcatgctctgtgaggagccctttctagccctgtctaggcagctgtctgaaggaggataa 383

                                                                       
Query: 185 gggagggctggggctggctgcctctgagctcaggcatgccaaggcgcctgagttccaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 gggagggctggggctggctgcctctgagctcaggcatgccaaggcacctgagttccaggg 443

                                                                       
Query: 245 tcacatgtgacagtcacagcagccatagtaaccccttccagcccaagccatggcctcgac 304
           || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 tcgcatgtgacagtcacagcagccatagtaaccccttacagcccaagccatggcctcgac 503

                                                                       
Query: 305 aggtggctgggggtcggaggtgtgggtccaggtcaaataccctgttcttttctgaatatt 364
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 aggtggctgggggttgggggtgtgggtccaggtcaaataccctgttcttttctgactatt 563

                                                                       
Query: 365 aacatctacccacgctaggcctcagcgtgctggagcaattcatcctattttcctagcagc 424
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 564 aacatctacccacgctaggcctcagtgtgctggagcaattcatcctattttcctagcagc 623

                                                                       
Query: 425 cttcctttctgctgtttaaataagaactgaaaaactacccaaatatagacacaacaaatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttcctttctgctgtttaaataagaactgaaaaactacccaaatatagacacaacaaatc 683

                                                                       
Query: 485 cagctgctacctagactcagatagcctcagtgtcatttgcctatcagaaaaagaaaa-ca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 684 cagctgctacctagactcagatagcctcagtgtcatttgcctatcagaaaaagaaaaaca 743

                                                                       
Query: 544 aaacaaaacaaaacaaaaacaggcgattcataatcactccaaggcaactgtagacagcaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaacaaaacaaaacaaaaacaggcgattcataatcactccaaggcaactgtagacagcaa 803

                                                                       
Query: 604 ccagttctgactcttggttttctgtgtcactgactactgaatttggagttttaa-tagga 662
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 804 ccagttctgactcttggttttctgtgtcactgactactgaatttggagttttaaatagga 863

                  
Query: 663 agtcaga 669
           |||||||
Sbjct: 864 agtcaga 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1070
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1060
Effective search space:   698540
Effective search space used:   698540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)