Query= MSMg01no504_b02.b1 MSMg01no504_b02.b1 CHROMAT_FILE:
MSMg01no504_b02.b1 PHD_FILE: MSMg01no504_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:33 2005
(685 letters)
>mm_chr1_179660248_179661333
Length = 1086
Score = 1239 bits (641), Expect = 0.0
Identities = 673/691 (97%), Gaps = 14/691 (2%)
Strand = Plus / Plus
Query: 4 ggaattcttccccccaactcgactcaggtgttaggtatgtgtatatatctgcctgcaggt 63
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 205 ggaattcttccccccaactcgactcaggtgttaggtatgtgtatatatctgcgtgcgggt 264
Query: 64 atgtgcacatgagacctgctgccatgcttcctgccatgaaagctagcaaatcccctggag 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtgtacatgagacctgctgccatgcttcctgccatgaaagctagcaaatcccctggag 324
Query: 124 ttggaggttcaggaagttttagctgcctgagtactgggaactgaacttcggtcctctgaa 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 ttggaggttcaggaagttttagctgcctgagtactgggaactgaacttcg-tcctctgaa 383
Query: 184 aaaacagcaagctcttgaaaccgttaagctatgtctctgcccctaaaaattattttagaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaacagcaagctcttgaaaccgttaagctatgtctctgcccctaaaaattattttagaa 443
Query: 244 tgtgaacagtggtctacttgggatgttttgaatattttttt-ctcagtattttataaaag 302
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 tgtgaacagtggtctacttgggatgttttgaatattttttttctcagtattttataaaag 503
Query: 303 tttggtatacccagctgcagagcaaccctgcagccacggggctaagcaggtctaacaccc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttggtatacccagctgcagagcaaccctgcagccacggggctaagcaggtctaacaccc 563
Query: 363 ctatgccgtctctatgttgtcatgtgactatgttaccctgaatgtcctgaatacagacac 422
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctatgctgtctctatgttgtcatgtgactatgttaccctgaatgtcctgaatacagacac 623
Query: 423 agctcttccaaggagaaagggctttacaaaatgtatctagaaagtcaacaggtactatct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agctcttccaaggagaaagggctttacaaaatgtatctagaaagtcaacaggtactatct 683
Query: 483 acacacagctgataaccct------------gctatggtttggatgtaatcagtcaccaa 530
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 684 acacacagctgataaccctacacagctgattgctatggtttggatgtaatcagtcaccaa 743
Query: 531 agggtttcaggtgttagaaggtgttgggaacactaaacattaagattaactattaatata 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agggtttcaggtgttagaaggtgttgggaacactaaacattaagattaactattaatata 803
Query: 591 tggtaactattaatatattaatattctataatattaataactattaaatattaagattaa 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tggtaactattaatatattaatattctataatattaataactattaaatattaagattaa 863
Query: 651 gaattacaataactgtggcaatgtagaaatt 681
|||||||||||||||||||||||||||||||
Sbjct: 864 gaattacaataactgtggcaatgtagaaatt 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space: 726300
Effective search space used: 726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_b02.g1 MSMg01no504_b02.g1 CHROMAT_FILE:
MSMg01no504_b02.g1 PHD_FILE: MSMg01no504_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:33 2005
(654 letters)
>mm_chr1_179684228_179685281
Length = 1054
Score = 1035 bits (535), Expect = 0.0
Identities = 547/551 (99%)
Strand = Plus / Minus
Query: 1 tattctagatggactggtgttttattttggccttattctttcctgtgtagattttcaaat 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tattctagatggactggcgttttattttggccttattctttcctgtgtagattttcaaat 492
Query: 61 cttggtgatgcctagttgaccatgttaagagactaagaaaggcagttgaaattatatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cttggtgatgcctagttgaccatgttaagagactaagaaaggcagttgaaattatatgga 432
Query: 121 attccatattcttggaggaaatttattcacagaaaggctacaatttggggggttgagtaa 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 431 attccatattcttggaggaaatttattcacagaaaggctacaatctggggggttgagtaa 372
Query: 181 gaagccaactgattgtcaggtgttagataatgtctcccagcacccagaatgcaggattcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaagccaactgattgtcaggtgttagataatgtctcccagcacccagaatgcaggattcc 312
Query: 241 ttaatgcaggattcctttccttgggattatttcttttctttgggacactttatctctttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttaatgcaggattcctttccttgggattatttcttttctttgggacactttatctctttt 252
Query: 301 cctgaagagagatgcctagttatcaaggcttcttgagaaagatgatgtgctgggctggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cctgaagagagatgcctagttatcaaggcttcttgagaaagatgatgtgctgggctggag 192
Query: 361 agatggcccagtggttaagagcactgactgctcttactgaggtcctgagttcaattccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agatggcccagtggttaagagcactgactgctcttactgaggtcctgagttcaattccca 132
Query: 421 gcaaccacatggtggctcacaactatctataatgggatcagatgcactcttctgctgtgt 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 131 gcaaccacatggtggctcacaaccatctataatgggatcagatgcactcttctgctgtgt 72
Query: 481 ctgaagacagctacagtgtacttatatataataactaaatctttaaagagagagagagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 71 ctgaagacagctacagtgtacttatatataataactaaatctttaaagagagagagacaa 12
Query: 541 ggatgttgttt 551
|||||||||||
Sbjct: 11 ggatgttgttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
