BAC Information

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BAC

Clone NameMSMg01-504I12
Chromosome1 (Build37)
Map Location 84,536,392 - 84,739,256
singlet/doubletdoublet
Overlap geneDner, Trip12
Upstream gene5033414K04Rik, LOC100039638
Downstream geneFbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504I12.T7 (MSMg01no504_i12.b1)MSMg01-504I12.TJ (MSMg01no504_i12.g1)
ACCAG579388AG579389
length752776
length of high quality
(start - end)		632 (73 - 704)295 (326 - 620)
definitionCHROMAT_FILE: MSMg01no504_i12.b1 PHD_FILE: MSMg01no504_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:10 2005CHROMAT_FILE: MSMg01no504_i12.g1 PHD_FILE: MSMg01no504_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:10 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(84,738,625 - 84,739,256)(84,536,392 - 84,536,686)
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGGCTTCCTTAAGGGTTAAATGTATTCACTAAAAAAGAAACT
GCTGGAGGCTGTATCTGATGAACAACGGATTGTCTCTTAACTTCACAGGA
CAGCTTGCAGGAATGTTTAGGACTTAGTTATTTTTCTCCTGTTTGTTTGG
CTGTCTGCGTTCATGGGAATTTGATTGTTTAATATACCTGTGTTGATGTG
CATAAGGTCAAAAGGGAGGAAATGTCTATGTTTAATACCATTGAGATACT
AAGAAGTTAAACACAGCATCTTCTCATGGTGAATTCTCTGAGTCTGTATG
CTATTGTTACTTTGATCTACTGAAACTTTGATCAAATTGAAACTGAAACT
TTCTTTATCCTCTAGATGGAGTGTGCCCGTCAGTAGCAAATCCTTTAGAA
GTTTACCTCATTCCCACACCACCTGAAAATATCACCTTTGAAGACCCATC
CTTAGATGTAATACTTCTTTTAAGAGTTTTACATGCCATCAGTCGATATT
GGTATTACTTGTATGATGTGAGTAATGTCTCCTTATGAAATCCTGTGCTC
TCGTACAGTTTTCTGTTTAGTAAATGAATTTTCTGTTAAACTAGAAATAG
ATACATACAGTGATTCATATTTACAATGAACTCATCTACAAAACTTTATT
TTTCGGTTAAGTTGTTTTTTTTTTTTTTTTTTTTAAAAAAACATTTTGTT
CT

NNAACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCCGAGGAATTCTAGAATCCGTGAAAGACTGTCTCC
AAAAAAAGAGCAATTGGGATTGGAGAGATGGCATGGGGGTTGAGAGCAAT
GGCCAATCTTGCAAAAGACCTGGGTTTGATTCCTAGCACTCACAAGGAGG
CTTACAACCATCTGCATCTAGTCTCCAAACATCCATGCCCTTTTCTGGCC
TCTATAGGCACTGCATGCACATATTACATAGACATATATGCACACAAAAC
ACCTATACACATAAAGTGTTTTTTACGTGAGAGCAATTGAGGAGGACAAC
CTATGTCAACCTCCGGTCTCCATACATACATGCTCATGCACACACACATG
CATATGTACAAACAAATGCATACACCTGCATGAACATACACACATGAACA
CATTCCCACATAAGCGTGTTCACACATGAACTCACACTTACACATGCTCA
TATACTCATACAAAGCATGAATAGTCTTCTCAAACTACTTTGCATGCACC
ATGATACCAGGTGCTGCCTATTATGGTCCGCAGTCTCTTAAACTAAGTCA
CTGGAATGAATTGCTCATGCACAAGGCCCTGTGCGCGTGTGATGAGAACA
GTGGCCAGTTGCTTCTTCCAGGTAGAAGTGTAAATTCTCTAAGCTTTAAT
GCCGTCCTTTGATGACGGAAATGCCTGGAATAACCCGAGTGAGAGCAGTA
TTGTCCCAGGTGGTCATCAAACAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_i12.b1 MSMg01no504_i12.b1 CHROMAT_FILE:
MSMg01no504_i12.b1 PHD_FILE: MSMg01no504_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:10 2005
         (632 letters)



>mm_chr1_84738425_84739456
          Length = 1032

 Score = 1199 bits (620), Expect = 0.0
 Identities = 629/632 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttaaatgtattcactaaaaaagaaactgctggaggctgtatctgatgaacaacggattg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 832 gttaaatgtattcactaaaaaagaaactgctggaagctgtatctgatgaacaacggattg 773

                                                                       
Query: 61  tctcttaacttcacaggacagcttgcaggaatgtttaggacttagttatttttctcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tctcttaacttcacaggacagcttgcaggaatgtttaggacttagttatttttctcctgt 713

                                                                       
Query: 121 ttgtttggctgtctgcgttcatgggaatttgattgtttaatatacctgtgttgatgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ttgtttggctgtctgcgttcatgggaatttgattgtttaatatacctgtgttgatgtgca 653

                                                                       
Query: 181 taaggtcaaaagggaggaaatgtctatgtttaataccattgagatactaagaagttaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 taaggtcaaaagggaggaaatgtctatgtttaataccattgagatactaagaagttaaac 593

                                                                       
Query: 241 acagcatcttctcatggtgaattctctgagtctgtatgctattgttactttgatctactg 300
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 acagcagcttcacatggtgaattctctgagtctgtatgctattgttactttgatctactg 533

                                                                       
Query: 301 aaactttgatcaaattgaaactgaaactttctttatcctctagatggagtgtgcccgtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaactttgatcaaattgaaactgaaactttctttatcctctagatggagtgtgcccgtca 473

                                                                       
Query: 361 gtagcaaatcctttagaagtttacctcattcccacaccacctgaaaatatcacctttgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtagcaaatcctttagaagtttacctcattcccacaccacctgaaaatatcacctttgaa 413

                                                                       
Query: 421 gacccatccttagatgtaatacttcttttaagagttttacatgccatcagtcgatattgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gacccatccttagatgtaatacttcttttaagagttttacatgccatcagtcgatattgg 353

                                                                       
Query: 481 tattacttgtatgatgtgagtaatgtctccttatgaaatcctgtgctctcgtacagtttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tattacttgtatgatgtgagtaatgtctccttatgaaatcctgtgctctcgtacagtttt 293

                                                                       
Query: 541 ctgtttagtaaatgaattttctgttaaactagaaatagatacatacagtgattcatattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctgtttagtaaatgaattttctgttaaactagaaatagatacatacagtgattcatattt 233

                                           
Query: 601 acaatgaactcatctacaaaactttatttttc 632
           ||||||||||||||||||||||||||||||||
Sbjct: 232 acaatgaactcatctacaaaactttatttttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no504_i12.g1 MSMg01no504_i12.g1 CHROMAT_FILE:
MSMg01no504_i12.g1 PHD_FILE: MSMg01no504_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:10 2005
         (295 letters)



>mm_chr1_84536192_84536886
          Length = 695

 Score =  571 bits (295), Expect = e-167
 Identities = 295/295 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgagagcaattgaggaggacaacctatgtcaacctccggtctccatacatacatgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtgagagcaattgaggaggacaacctatgtcaacctccggtctccatacatacatgctc 260

                                                                       
Query: 61  atgcacacacacatgcatatgtacaaacaaatgcatacacctgcatgaacatacacacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcacacacacatgcatatgtacaaacaaatgcatacacctgcatgaacatacacacat 320

                                                                       
Query: 121 gaacacattcccacataagcgtgttcacacatgaactcacacttacacatgctcatatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacacattcccacataagcgtgttcacacatgaactcacacttacacatgctcatatac 380

                                                                       
Query: 181 tcatacaaagcatgaatagtcttctcaaactactttgcatgcaccatgataccaggtgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatacaaagcatgaatagtcttctcaaactactttgcatgcaccatgataccaggtgct 440

                                                                  
Query: 241 gcctattatggtccgcagtctcttaaactaagtcactggaatgaattgctcatgc 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctattatggtccgcagtctcttaaactaagtcactggaatgaattgctcatgc 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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