Query= MSMg01no504_j13.b1 MSMg01no504_j13.b1 CHROMAT_FILE:
MSMg01no504_j13.b1 PHD_FILE: MSMg01no504_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:14 2005
(656 letters)
>mm_chr1_117662252_117663301
Length = 1050
Score = 965 bits (499), Expect = 0.0
Identities = 558/585 (95%), Gaps = 18/585 (3%)
Strand = Plus / Minus
Query: 79 ttttgcacctctctgaccaggtagtggagcctactattcagaaatctaggccaatgaagt 138
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1050 ttttgcacctctctgatcaggtagtggagcctactattcagaaatcttggccaatgaagt 991
Query: 139 acctggattcaaccatgaagcagaggacacctgggaaacaacactcaggctgtcctctgg 198
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 990 acctggattcaaccatgaagcagtggacacctgggaaacaacactcaggctgtcctctga 931
Query: 199 tttacacac--cacacacacacacacacacacacacatacacacacacacaag----cac 252
||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 930 tttacacaccacacacacacacacacacacacacacacacacacacacacaagcacacac 871
Query: 253 ttttatacacatgcacaaatgcacgtaccccacagtcaagccttaggtgattagcaatat 312
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 870 ----atacacatgcacaaatgcacgtaccccacagtcaatccttaggtgattagcaatat 815
Query: 313 taaacaacaccagtgataaa-aagtgccggcatacttctaaatctggaaagcttaacaag 371
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 814 taaacaacaccagtgataaagaa-cgccggcatacttctaaatctggaaagcttaacaag 756
Query: 372 aagctatgggggaaaaaaacttctttcttcagaagaaaatatatccatagggaaaagaag 431
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aagctatgggggaaaaaaa---ctttcttcagaagaaaatatatccatagggaaaagaag 699
Query: 432 agactgtgggccatggggattgaaacacaaaagaagggaagaagatctgttctgctgtga 491
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 698 agactgtgggccatggggattgaaacacaaaagaagg---gaagatcttttctgctgtga 642
Query: 492 gtctggggaactgccaggcagactggctgtggtgaaatcacattatgacagagaactcct 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gtctggggaactgccaggcagactggctgtggtgaaatcacattatgacagagaactcct 582
Query: 552 ctctgtgtgctttgtatggaaatgctccctaccccaatgtccaccccaatgtccacccca 611
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctctgtgtgctttgtacggaaatgctccctaccccaatgtccaccccaatgtccacccca 522
Query: 612 atgcccatatgctaaaatcctggtccccagctgcatatacctgag 656
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atgcccatatgctaaaatcctggtccccagctgcatatacctgag 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1050
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1040
Effective search space: 671840
Effective search space used: 671840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_j13.g1 MSMg01no504_j13.g1 CHROMAT_FILE:
MSMg01no504_j13.g1 PHD_FILE: MSMg01no504_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:15 2005
(354 letters)
>mm_chr1_117452894_117453647
Length = 754
Score = 642 bits (332), Expect = 0.0
Identities = 335/336 (99%)
Strand = Plus / Plus
Query: 1 tttgatacactctgctcacctacacagattgggagacatgaaacctaatgcaatagttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgatacactctgctcacctacacagattgggagacatgaaacctaatgcaatagttga 260
Query: 61 ttctgggaatggaatgtgataagagcaagaagactcatggatgctggggagataacacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgggaatggaatgtgataagagcaagaagactcatggatgctggggagataacacag 320
Query: 121 ttgtttgagtctgtaattccagtactaaggaggtgaagtaagtctgattctagccagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtttgagtctgtaattccagtactaaggaggtgaagtaagtctgattctagccagttg 380
Query: 181 ccagcaaaggagtctagctgagttgatgagcttcatgttcagtgagacttcctgactcat 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ccagcaaaggagtctagctgagttgatgagcttcatgttcagtgagacctcctgactcat 440
Query: 241 aaaataatgtgaaaacagccaaggaagaacagtcagtttcagcctctgggttctttaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaataatgtgaaaacagccaaggaagaacagtcagtttcagcctctgggttctttaagc 500
Query: 301 atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 336
||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space: 257025
Effective search space used: 257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
