BAC Information

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BAC

Clone NameMSMg01-504N15
Chromosome1 (Build37)
Map Location 52,119,550 - 52,162,148
singlet/doubletdoublet
Overlap geneStat4, LOC100042634
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014
Downstream geneStat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504N15.T7 (MSMg01no504_n15.b1)MSMg01-504N15.TJ (MSMg01no504_n15.g1)
ACCAG579630AG579631
length759766
length of high quality
(start - end)		688 (69 - 756)569 (48 - 616)
definitionCHROMAT_FILE: MSMg01no504_n15.b1 PHD_FILE: MSMg01no504_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:36 2005CHROMAT_FILE: MSMg01no504_n15.g1 PHD_FILE: MSMg01no504_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,119,550 - 52,120,237)(52,161,580 - 52,162,148)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACATTTCAGGGTTCATTTTATTGCTGTTCTGTGAGCTATGTA
CATAGTCACTACTCACAGGTGAGCCAGAACACATTTTTAATACTTAGGAA
AGTGAAATAGTAATTTGGCACTGAATAAACGGTTGTTTTTCACAAGACAT
TTTGTCTCAAATATTAAAGTGAGGCATTACATTAGAGGGTGTTAAAGAAG
AAAATGAACATGTATTAGTTAATGAAAAAAGTTTTGATGTCTGGCCCTTA
AAGGAGAGGAGTGTGTGATTTAATCTCACAGATCTGGAGGAAAGCAGAGG
CAAAGCAAGGGGAAGGAAGTTGAGCGTTGACAGGAAAATGACGATCACAG
CCATGTTGTGAGCAGCACCCGGATCGGAGACGACATCAGTGTGTCTGCAG
CATTAGAGGAACCCTTCATCCCAGAAGGACAAATTCACAGTTTATATTAA
TAACACAGTTTGCAAATTATCCCTAAAAGAAACCCTTTTTAGCAAGGAAA
CATTTTTAGTGCCATTAAGGTAAAAAAGGAGAAAATAGGTTTGTTGAGGG
GAGCTGGCGGGGGACTTTACGGCAAGCTATATGAAAAGAACCAAGAGATA
TCAAAATTAGCAGGAATAAATTCACATAGACTGAAATGTAGACATGTTAG
AAACAGCTATTAAAAAGAATGAATTGATGAAATTCCTAGGCAAATGGATG
GACCTGGAG

NNCCCTATCCGTTAGGAAGCTTTTTGAAAGAAAATTCCAATTCATAACAA
ATATTTTACATGTTACTTCAGATACTCACATTGTTGAAATGGGGATAAAA
ACAGAGGGGACGTAACCCTTGTCTCCCCGTTCGGTTGGTCTTGAGACTGA
AAAAGAAAGGCACAGTGATGGGGGGAGATGTCAGCATTATTGATAAAATT
GGAAATAAAGCATCTAGGAAAATACATAATGCTCAGAAGAAAATAAATAA
CAAGGTTGTCTTGTAATTCACAAGACCTTTTAGTTGAATGGAAGAAATGG
CCACATAGACAAACCTGAAATCCGTAATCAAACAACAAAACTCTTAGCAG
GCTGATCTGGCTTTGCGTATCAATGACTCTATAGTGTCTAATAATCGAGA
CTGTACGTCTTCATGTGCCCTTTATGTTGTATTTAAGTTTGGCATTAGTA
TCTGATTCATTTGTGTATTGGGAGGAATTTATAGTGCTGTAGTGTCTCTC
AAAGGTCATTTTCTTAAAGGTTTGGTTGCTGGTCTGTGGGCTCCTGGGAG
TAATAGAACCTTTAAAACGTGGAGCCTGGAGGAAGGAAAGTCATCGGGTG
TGTGCTTTATTAGGAAGATTGAGACAACAGGCTTTTTTTTTCCCTCTTCT
TCTGGGNAACATGATCCCATGATGATGTCTTATTGAAGGCCTAACAGTGA
TGGGGGCAACCTCCATAGATTGAAGTCTTCCAGACTGTTAAATCAGCAAA
GCTTTTTGCTCTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_n15.b1 MSMg01no504_n15.b1 CHROMAT_FILE:
MSMg01no504_n15.b1 PHD_FILE: MSMg01no504_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:36 2005
         (688 letters)



>mm_chr1_52119350_52120437
          Length = 1088

 Score = 1292 bits (668), Expect = 0.0
 Identities = 683/688 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcattttattgctgttctgtgagctatgtacatagtcactactcacaggtgagccaga 60
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 201 gttcattttattgctgttccgtgagctatgtacatggtcactactcacaggtgagcctga 260

                                                                       
Query: 61  acacatttttaatacttaggaaagtgaaatagtaatttggcactgaataaacggttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacatttttaatacttaggaaagtgaaatagtaatttggcactgaataaacggttgttt 320

                                                                       
Query: 121 ttcacaagacattttgtctcaaatattaaagtgaggcattacattagagggtgttaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcacaagacattttgtctcaaatattaaagtgaggcattacattagagggtgttaaaga 380

                                                                       
Query: 181 agaaaatgaacatgtattagttaatgaaaaaagttttgatgtctggcccttaaaggagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaatgaacatgtattagttaatgaaaaaagttttgatgtctggcccttaaaggagag 440

                                                                       
Query: 241 gagtgtgtgatttaatctcacagatctggaggaaagcagaggcaaagcaaggggaaggaa 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcgtgtgatttaatctcacagatctggaggaaagcagaggcaaagcaaggggaaggaa 500

                                                                       
Query: 301 gttgagcgttgacaggaaaatgacgatcacagccatgttgtgagcagcacccggatcgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgagcgttgacaggaaaatgacgatcacagccatgttgtgagcagcacccggatcgga 560

                                                                       
Query: 361 gacgacatcagtgtgtctgcagcattagaggaacccttcatcccagaaggacaaattcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacgacatcagtgtgtctgcagcattagaggaacccttcatcccagaaggacaaattcac 620

                                                                       
Query: 421 agtttatattaataacacagtttgcaaattatccctaaaagaaaccctttttagcaagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttatattaataacacagtttgcaaattatccctaaaagaaaccctttttagcaagga 680

                                                                       
Query: 481 aacatttttagtgccattaaggtaaaaaaggagaaaataggtttgttgaggggagctggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacatttttagtgccattaaggtaaaaaaggagaaaataggtttgttgaggggagctggc 740

                                                                       
Query: 541 gggggactttacggcaagctatatgaaaagaaccaagagatatcaaaattagcaggaata 600
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggggactttacggcaagctatatgaaaagaaccaagagatatcaaaattagcaggaata 800

                                                                       
Query: 601 aattcacatagactgaaatgtagacatgttagaaacagctattaaaaagaatgaattgat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aattcacatagactgaaatgtagacatgttagaaacagctattaaaaagaatgaattgat 860

                                       
Query: 661 gaaattcctaggcaaatggatggacctg 688
           ||||||||||||||||||||||||||||
Sbjct: 861 gaaattcctaggcaaatggatggacctg 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no504_n15.g1 MSMg01no504_n15.g1 CHROMAT_FILE:
MSMg01no504_n15.g1 PHD_FILE: MSMg01no504_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:36 2005
         (569 letters)



>mm_chr1_52161506_52162474
          Length = 969

 Score = 1015 bits (525), Expect = 0.0
 Identities = 558/569 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatattttacatgttacttcagatactcacattgttgaaatggggataaaaacagagg 60
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 643 caaatattttacatgtgactacagatactcacattgttgaaatggggataaaaacagagg 584

                                                                       
Query: 61  ggacgtaacccttgtctccccgttcggttggtcttgagactgaaaaagaaaggcacagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggacgtaacccttgtctccccgttcggttggtcttgagactgaaaaagaaaggcacagtg 524

                                                                       
Query: 121 atggggggagatgtcagcattattgataaaattggaaataaagcatctaggaaaatacat 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 523 atggggggagatgtcagcattattgataaaattggaaataaaacatctaggaaaatacat 464

                                                                       
Query: 181 aatgctcagaagaaaataaataacaaggttgtcttgtaattcacaagaccttttagttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aatgctcagaagaaaataaataacaaggttgtcttgtaattcacaagaccttttagttga 404

                                                                       
Query: 241 atggaagaaatggccacatagacaaacctgaaatccgtaatcaaacaacaaaactcttag 300
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 403 atggaagaaatggccacataggcaaacctgaaatccataatcaaacaacaaaactcttag 344

                                                                       
Query: 301 caggctgatctggctttgcgtatcaatgactctatagtgtctaataatcgagactgtacg 360
           ||||||||||||||||| | || ||||||||||||| |||| ||||||||||||||||| 
Sbjct: 343 caggctgatctggctttacatagcaatgactctataatgtccaataatcgagactgtact 284

                                                                       
Query: 361 tcttcatgtgccctttatgttgtatttaagtttggcattagtatctgattcatttgtgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcttcatgtgccctttatgttgtatttaagtttggcattagtatctgattcatttgtgta 224

                                                                       
Query: 421 ttgggaggaatttatagtgctgtagtgtctctcaaaggtcattttcttaaaggtttggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ttgggaggaatttatagtgctgtagtgtctctcaaaggtcattttcttaaaggtttggtt 164

                                                                       
Query: 481 gctggtctgtgggctcctgggagtaatagaacctttaaaacgtggagcctggaggaagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gctggtctgtgggctcctgggagtaatagaacctttaaaacgtggagcctggaggaagga 104

                                        
Query: 541 aagtcatcgggtgtgtgctttattaggaa 569
           |||||||||||||||||||||||||||||
Sbjct: 103 aagtcatcgggtgtgtgctttattaggaa 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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