Query= MSMg01no505_d18.b1 MSMg01no505_d18.b1 CHROMAT_FILE:
MSMg01no505_d18.b1 PHD_FILE: MSMg01no505_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:05 2005
(691 letters)
>mm_chr1_65522948_65524038
Length = 1091
Score = 949 bits (491), Expect = 0.0
Identities = 531/557 (95%), Gaps = 22/557 (3%)
Strand = Plus / Minus
Query: 156 acacaaaataaagtttttaaatgtacaaaaggaatgtaaatctattctatatattctatt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 acacaaaataaagtttttaaatgtacaaaaggaatgtaaatctattctatatattctatt 1032
Query: 216 ctatcgtatcatattgtatcctac--------------------ctcttctcttctcttc 255
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1031 ctatcgtatcatattgtatcctacctcttctcttctcttctcttctcttctcttctcttc 972
Query: 256 tcttctcttctcttctcttctcttctcttctcttttctcctattccattccattccgttc 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 tcttctcttctcttctcttctcttctcttctcttttctcctattccattccattccgttc 912
Query: 316 tattctatttcccctttcccagggagatgctagcatcctccccttaagccctccttgtta 375
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 911 tattctatttcccctttcccagggagatgctagcatcctccccttaagcccgccttgtta 852
Query: 376 cttagcctctctgggtcagtggactgtgggatgattgtcttttactttacagataatatg 435
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 851 cttagcctctctgggtcagtggactgtgggatgattgtcttttactttacagctaaaatg 792
Query: 436 caattgtggtcaggatttaatatatgaaagaaaaaggaaaaaaatagaagaaaaaaacag 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 caattgtggtcaggatttaatatatgaaagaaaaaggaaaaaaatagaagaaaaaaacag 732
Query: 496 agaaatgtatgggggaagaagtgaatggtgatagggcagagggagagggaaaggatactg 555
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 731 agaaatgtatgggggaagaagtgaatggtgatagggcagggggagagggaaaggatactg 672
Query: 556 cattctgaatgtgatatgtgagaaaaaacaaataaaaatataatatttattagtaaattg 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cattctgaatgtgatatgtgagaaaaaacaaataaaaatataatatttattagtaaattg 612
Query: 616 ggtctaaatttattaaaatatatgtaataattctaacaaaaagagtctctttaaaactat 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ggtctaaatttattaaaatatatgtaataattctaacaaaaagagtctctttaaaactat 552
Query: 676 aaggta-ttaaaatgta 691
||| || ||||||||||
Sbjct: 551 aag-taattaaaatgta 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_d18.g1 MSMg01no505_d18.g1 CHROMAT_FILE:
MSMg01no505_d18.g1 PHD_FILE: MSMg01no505_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:06 2005
(494 letters)
>mm_chr1_63709227_63710120
Length = 894
Score = 919 bits (475), Expect = 0.0
Identities = 490/495 (98%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 1 tagtggactcagcagacctgtttcagcccatgagaaacgtgtttcacatctaaactggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtggactcagcagacctgtttcagcccatgagaaacgtgtttcacatctaaactggtg 260
Query: 61 aagatcaggaaatacaagaagagaaagggaccaaatgggccaatgagaagccctggggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatcaggaaatacaagaagagaaagggaccaaatgggccaatgagaagccctggggct 320
Query: 121 ctgacctccttcccttccgggccccttgtgacttgttagctagtctggggggttttaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ctgacctccttcccttccgggccccttgtgacttgttagctagtctggggggtttcaccc 380
Query: 181 cttgcatagttgcatacccctgaccataaatcataactcaggctcgtctttggcctagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgcatagttgcatacccctgaccataaatcataactcaggctcgtctttggcctagga 440
Query: 241 ttcttttttctttctttccttctcttcaaaacctatatcctaacctctctccctctctcc 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctcatttctttctttccttctcttcaaaacctatatcctaacctctctccctctctcc 500
Query: 301 ctctctctctccctttcatttctttcttttttttttt-ccccatttttccagacactgtt 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ctctctctctccctttcatttctttcttttttttttttccccatttttccagacactgtt 560
Query: 360 tctctgtgtggccctggctgtcttagaactcactctgtagaccaggttgatctgcccctg 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctgtgtagccctggctgtcttagaactcactctgtagaccaggttgatctgcccctg 620
Query: 420 tctctgtagtgcttagagtagaggtatgagccactaccaccctgccatggtacctcattt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctctgtagtgcttagagtagaggtatgagccactaccaccctgccatggtacctcattt 680
Query: 480 acttgtttgtttgtt 494
|||||||||||||||
Sbjct: 681 acttgtttgtttgtt 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
