NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTGTTTTCGAAAGAAAAAATTAAATATAGTGAAACACTTTGG
GTAAGTACTCACAGAATCTAAAATTATCTTACCAGCAAAGAAATAACTTA
CATGTCCTTGACTCGTCAACATTTTACTAGGTTGGCTGGAATTCTGCTGA
TATACAAAGAAATAATACCATCAAGTATGTTGTATCTCAATGGTTAATGT
GTACATGAAATATTTAATGGATTGCTGGACTAATGTGCACTGTTCACTCC
TTAAAAATCAAATAGTTAAGGATGAATTTTACATGTAAATTACAATCTAG
CACAACAAAACTTAGTAAATATTTTGAGACTACAACAATGTAATGCATGG
AAGAAATTATCTTAAAGTTATAAAACAACTTAAATCATTGCAACATACTT
AACTCCCATTTGATATTTAAAATTGCTCTTTAAATATCTGATCACAAAGT
GGCAGTGATGTGAAAAAGGACATAGTTTTATGAGTGTCCTGGTACAAGGC
ACACTAGGCTCACAAAGTGCAGTTACTGGCAGTTATATATTTCCCATGGC
TTCCATGAAGATCTTTGGTTCTATGACTGAAAGTATTTATTAATATCTGG
AGTGTTTTACACATGAAATGAAATGAATAAATGTGAGATGAGTCAATTAC
ACTGAGTTTATTGGCAGGTGCAAGAGAAATATGTATAAACCTCAAAGTAA
GTCATTATTCCATTACAAACATCATCCT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGAAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTAAGATTCCACCTCACAGCAGTCTGAAGGACTAA
GATAAAAAATCCAGGTGAAAGCAGATGCTGGCGTGGATGTGGAGAAAGAG
GAACACTCTTCCATTGTTGGTGGGATTGCAGGCTTGTCCAACCGCTCTGG
AAATCAGTATGGCGGTTCCTCATTATTATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGAATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCAAAACCTAGGATACCCNAGATATAAGATACAAT
TTGCTAAACACATGANACTCTAGAAAAATGAGACTGAAGTGGGACCCTAT
GGCCCCTCTTATAAGTGGGAACAAACACCCCTG

Query= MSMg01no505_e13.b1 MSMg01no505_e13.b1 CHROMAT_FILE:
MSMg01no505_e13.b1 PHD_FILE: MSMg01no505_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:09 2005
         (626 letters)



>mm_chr1_144195386_144196411
          Length = 1026

 Score = 1172 bits (606), Expect = 0.0
 Identities = 621/626 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaattaaatatagtgaaacactttgggtaagtactcacagaatctaaaattatcttacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 aaaattaaatatagtgaaacactttgggtaagtactcacagaatctaaaattatcttacc 767

                                                                       
Query: 61  agcaaagaaataacttacatgtccttgactcgtcaacattttactaggttggctggaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agcaaagaaataacttacatgtccttgactcgtcaacattttactaggttggctggaatt 707

                                                                       
Query: 121 ctgctgatatacaaagaaataataccatcaagtatgttgtatctcaatggttaatgtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctgctgatatacaaagaaataataccatcaagtatgttgtatctcaatggttaatgtgta 647

                                                                       
Query: 181 catgaaatatttaatggattgctggactaatgtgcactgttcactccttaaaaatcaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 catgaaatatttaatggattgctggactaatgtgcactgttcactccttaaaaatcaaat 587

                                                                       
Query: 241 agttaaggatgaattttacatgtaaattacaatctagcacaacaaaacttagtaaatatt 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 586 agttaaggatgaattttacatgtaaattacaatctatcacaacaaaacttactaaatatt 527

                                                                       
Query: 301 ttgagactacaacaatgtaatgcatggaagaaattatcttaaagttataaaacaacttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttgagactacaacaatgtaatgcatggaagaaattatcttaaagttataaaacaacttaa 467

                                                                       
Query: 361 atcattgcaacatacttaactcccatttgatatttaaaattgctctttaaatatctgatc 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtcattgcaacatacttaactcccatttgatatttaaaattgctctttaaatatctgatc 407

                                                                       
Query: 421 acaaagtggcagtgatgtgaaaaaggacatagttttatgagtgtcctggtacaaggcaca 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 406 acaaagtggcagtgatgtgaaaaaggacgtagttttatgagtgtcctggtacaaggcaca 347

                                                                       
Query: 481 ctaggctcacaaagtgcagttactggcagttatatatttcccatggcttccatgaagatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctaggctcacaaagtgcagttactggcagttatatatttcccatggcttccatgaagatc 287

                                                                       
Query: 541 tttggttctatgactgaaagtatttattaatatctggagtgttttacacatgaaatgaaa 600
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 286 tttggttctatgactgaaagtatttattaatatctggagagttttacacatgaaatgaaa 227

                                     
Query: 601 tgaataaatgtgagatgagtcaatta 626
           ||||||||||||||||||||||||||
Sbjct: 226 tgaataaatgtgagatgagtcaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)